View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16132_low_7 (Length: 268)
Name: NF16132_low_7
Description: NF16132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16132_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 16401950 - 16402199
Alignment:
| Q |
1 |
aattggaagatcgattgcagcgtaagcttcttccggagtaataactctgaatattaccataagcattgcacctaaaagagatcctgctgttctaccaatt |
100 |
Q |
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| T |
16401950 |
aattggaagatcgattgcagcgtacgcttcttccggagtaataactcgaaatattaccataagcattgcacctaaaagagatcctgctgttctacctatt |
16402049 |
T |
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| Q |
101 |
ggtagaaatggaactgctggaaaaactgctaatatccagaaaattgcaaaggctattgaacctaaaacaacttttggaattggagctagtgcca-nnnnn |
199 |
Q |
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| T |
16402050 |
ggtagaaatggaactgctggaaaaactgctaatatccagaaaatggcaaaggctattgaacctaaaacaacttttggaattggagctagtgccatttttt |
16402149 |
T |
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| Q |
200 |
nnattcaacaaccaaatcttaactctaatcaaagatcaaaaactccacct |
249 |
Q |
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| T |
16402150 |
ttattcaacaatcaaatcttaactctaatcaaagatcaaaaactccacct |
16402199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 5 - 194
Target Start/End: Complemental strand, 14304991 - 14304802
Alignment:
| Q |
5 |
ggaagatcgattgcagcgtaagcttcttccggagtaataactctgaatattaccataagcattgcacctaaaagagatcctgctgttctaccaattggta |
104 |
Q |
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|||||||||||||| ||||||||||| |||||| | |||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||| |
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| T |
14304991 |
ggaagatcgattgcggcgtaagcttcgtccggacttataactctgaatattaccataagcatcgcacctaatagggatcctgctgttctaccaattggta |
14304892 |
T |
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| Q |
105 |
gaaatggaactgctggaaaaactgctaatatccagaaaattgcaaaggctattgaacctaaaacaacttttggaattggagctagtgcca |
194 |
Q |
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| T |
14304891 |
gaaaaggaactgctggaaaaactgctaatatccagaaaattgcaaaggcaattgaacctagaacaacttttggaataggagctagtgcca |
14304802 |
T |
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