View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16132_low_8 (Length: 261)
Name: NF16132_low_8
Description: NF16132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16132_low_8 |
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| [»] chr6 (5 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 13 - 261
Target Start/End: Complemental strand, 11962639 - 11962391
Alignment:
| Q |
13 |
aatattatagttatctcttagattgagatatcgtaaacgtgtaagattcccgagttgagaaggaatttctccattcgtaccataattcatccaacttaga |
112 |
Q |
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| T |
11962639 |
aatattaaagttatctcttagattgagatatcgtaaacgtgtaagattcccgagttgagaagggatttctccttttgtaccataaaccatcccacttaga |
11962540 |
T |
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| Q |
113 |
tctagatattcaagatctaaaagttttccaatttgataaggaatcctcccaccaagtaaagaatttgagagattgagatactttaacttggtaagtgagc |
212 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||| | ||||||||||||||||||||||||||||||||||| |
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| T |
11962539 |
tctagatattcaagctctaaaagttttccaatttgataaggaatcctcccacgaggtaaagattctgagagattgagatactttaacttggtaagtgagc |
11962440 |
T |
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| Q |
213 |
ctatttgttctgaaatatggctgccaagaaaatcattagagctaagatc |
261 |
Q |
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| T |
11962439 |
ctatttgttctgaaatatggctgccaggaaaatcgttagagctaagatc |
11962391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 13 - 227
Target Start/End: Original strand, 11852912 - 11853126
Alignment:
| Q |
13 |
aatattatagttatctcttagattgagatatcgtaaacgtgtaagattcccgagttgagaaggaatttctccattcgtaccataattcatccaacttaga |
112 |
Q |
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|||||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||| |||| ||||||| |
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| T |
11852912 |
aatattttcgttatctcttaggttgagatatcgtaaacgtgtaagattcccgagttgagaagggatttctccgtttataccataaaacatctcacttaga |
11853011 |
T |
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| Q |
113 |
tctagatattcaagatctaaaagttttccaatttgataaggaatcctcccaccaagtaaagaatttgagagattgagatactttaacttggtaagtgagc |
212 |
Q |
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| T |
11853012 |
tctagatattcaagatctaaaagttttccaatttgataaggaatcctcccaccaacaaaagaatttgagaaattgagatactttaacttggtaagtgagc |
11853111 |
T |
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| Q |
213 |
ctatttgttctgaaa |
227 |
Q |
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| T |
11853112 |
ctatttgttctgaaa |
11853126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 13 - 128
Target Start/End: Original strand, 11833648 - 11833763
Alignment:
| Q |
13 |
aatattatagttatctcttagattgagatatcgtaaacgtgtaagattcccgagttgagaaggaatttctccattcgtaccataattcatccaacttaga |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||| |||| ||||||| |
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| T |
11833648 |
aatattatagttatctcttagattgagatatcgtaaacgtgtaagattcccgagttgagaagggatttctccgtttgtaccataaaacatctcacttaga |
11833747 |
T |
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| Q |
113 |
tctagatattcaagat |
128 |
Q |
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| T |
11833748 |
tctagatattctagat |
11833763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 26 - 261
Target Start/End: Complemental strand, 11928365 - 11928130
Alignment:
| Q |
26 |
tctcttagattgagatatcgtaaacgtgtaagattcccgagttgagaaggaatttctccattcgtaccataattcatccaacttagatctagatattcaa |
125 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||| ||||||| | ||||| ||||| ||| || | |
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| T |
11928365 |
tctcttagattgagatatcgtaaacgtgtaagattcccaagttgaggaggtatttctccattcaaaccataaaaacttttacttaaatctaaatactcta |
11928266 |
T |
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| Q |
126 |
gatctaaaagttttccaatttgataaggaatcctcccaccaagtaaagaatttgagagattgagatactttaacttggtaagtgagcctatttgttctga |
225 |
Q |
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| | |||||| ||||| |||||||||||||| ||||| || || |||| || | ||||||||| |||||||||||| |||| ||||| |||||||| |
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| T |
11928265 |
gctataaaagatttcctatttgataaggaattctcccgggaaatacagaaaacgataaattgagatattttaacttggtatgtgatcctatgtgttctga |
11928166 |
T |
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| Q |
226 |
aatatggctgccaagaaaatcattagagctaagatc |
261 |
Q |
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|||||| |||||| |||| |||||||||||||||| |
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| T |
11928165 |
aatatgtctgccaggaaatacattagagctaagatc |
11928130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 188 - 229
Target Start/End: Original strand, 11833760 - 11833801
Alignment:
| Q |
188 |
agatactttaacttggtaagtgagcctatttgttctgaaata |
229 |
Q |
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| T |
11833760 |
agatactttaacttggtaagtgagcctatttgttctgaaata |
11833801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 228
Target Start/End: Complemental strand, 48207369 - 48207317
Alignment:
| Q |
176 |
tttgagagattgagatactttaacttggtaagtgagcctatttgttctgaaat |
228 |
Q |
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| T |
48207369 |
tttgagagattgagaaaccttaacttggtaagtgagtctatgtgttcagaaat |
48207317 |
T |
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