View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16133_high_1 (Length: 860)
Name: NF16133_high_1
Description: NF16133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16133_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 776; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 776; E-Value: 0
Query Start/End: Original strand, 13 - 841
Target Start/End: Complemental strand, 33563472 - 33562644
Alignment:
| Q |
13 |
catcaacactaataacaatgtaccatttcccttcgatatgctacctgttccgtgaacaccagtcgccgttgccatcacaatagccaccgcaatcttcaga |
112 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33563472 |
catcaacactaataacaatgtaccatttcccttcgatatgctacctgttccatgaacaccagtcgccgttgccatcacaatagccaccgcaatcttcaga |
33563373 |
T |
|
| Q |
113 |
gcaatagataacacaaattagtaacataataagatgcgcaatgcaaattatgtgtataatatagtactatctctaatttctaaactaaattttgtgctga |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
33563372 |
gcaatagataacacaaattagtaacataataagatgcgcaatgcaaattatgtgtataatatagtactatctctaatttctaaactaaatttagtgctga |
33563273 |
T |
|
| Q |
213 |
gagaattaaagatagaaagaaatctaggtagtattaagcttacttgactgataagcatctgaatgccacctatgatgaacaagactcttcgaccaacccg |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33563272 |
gagaattaaagatagaaagaaatctaggtagtattaagcttacttgactgataagcatctgaatgccacctatgatgaacaagactcttcgaccaacccg |
33563173 |
T |
|
| Q |
313 |
atcaacaatggttgagaagacgatgactgaaacaatgttaacaagtccaagtataatgttaccaagcaaagctgcttcgtgaccaaagccaatcgataca |
412 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33563172 |
atcaacaatggttgagaagacgatgactgaaacaatgttaacaagtccaagtataatgttaccaagcaaagctgcttcgtgaccaaagccaatcgataca |
33563073 |
T |
|
| Q |
413 |
aaaaggttaggtgcatagaatgcaaccatgttgatccccgtgagttgttgaaaaagcggaatagcaactgctatcaccaagtgaggtcgatattgtctct |
512 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33563072 |
aaaaggttaggtgcatagaatgcaaccatgttgatccccgtgagttgttgaaaaagcggaatagcaactgctatcaccaagtgaggtcgatattgtctct |
33562973 |
T |
|
| Q |
513 |
ccaatatggtcaaaaaaggctcttgcttcaaagattttgcatattgtgattgtttaacaagttcttctaactcgggttcaacattgtctgagcctctgat |
612 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
33562972 |
ccaatatggtcaaaaaaggctcttgcttcaaagattttgcatattgtgactgtttaacaagttcttctaactctggttcaacattgtctgagcctctgat |
33562873 |
T |
|
| Q |
613 |
tttatgcaaagcttttctggcttcatctatcttcccacggtccaccaaactgtttggtgtgtcgcatataattaaggcgccgatagtgatcaatgctgct |
712 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
33562872 |
ttcatgcaaagcttttctggcttcatctatcttcccacgctccaccaaactgtttggtgtgtcgtatataattaaggcgccgatagtgatcaatgctgct |
33562773 |
T |
|
| Q |
713 |
ggaaccacggctaagccaagagagattcgccatccccaagggtgttttgcagcgacaaagtttatgaaccccgcagccacaacgccaatttgcatnnnnn |
812 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
33562772 |
ggaaccacggctaagccaagagagattcgccatccccaagggtgttttgcagcgacaaagtttatgaaccccgcagccacaacgccaacttgcataaaaa |
33562673 |
T |
|
| Q |
813 |
nnttaaaccctgtgcctaatgctcctcgc |
841 |
Q |
| |
|
||||||||||||||||||||||||||| |
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| T |
33562672 |
aattaaaccctgtgcctaatgctcctcgc |
33562644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 416 - 750
Target Start/End: Complemental strand, 33588574 - 33588237
Alignment:
| Q |
416 |
aggttaggtgcatagaatgcaaccatgttgatccccgtgagttgttgaaaaagcggaatagcaactgctatcaccaagtgaggtcgatattgtctctcca |
515 |
Q |
| |
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||||| |||| |||||| || || ||||||||||| || | |||||||||| || || | || ||| || |||||||||||||||||||||||||| | |
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| T |
33588574 |
aggtttggtgaatagaaagcgacaatgttgatccctgtaaactgttgaaaaaatgggattgaaaatgccatgaccaagtgaggtcgatattgtctctcta |
33588475 |
T |
|
| Q |
516 |
atatggtcaaaaaaggctcttgcttcaaagattttgcatattgtgattgtttaacaagttcttctaactcgggttcaacat---tgtctgagcctctgat |
612 |
Q |
| |
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||||||||| ||| |||||||| | || | ||| | | || || |||| ||||||||||||||||| ||||||| || ||| |||||||| |
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| T |
33588474 |
atatggtcataaatggctcttgttgcactgctttcgaaatttctgtccacttaaagagttcttctaactcgggctcaacatcaatggatgatcctctgat |
33588375 |
T |
|
| Q |
613 |
tttatgcaaagcttttctggcttcatctatcttcccacggtccaccaaactgtttggtgtgtcgcatataattaaggcgccgatagtgatcaatgctgct |
712 |
Q |
| |
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||| ||||| ||||| ||||||| |||||||| ||||| || ||||| ||| | ||||||||| |||| | ||||| || || || |||| ||| | |
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| T |
33588374 |
tttttgcaatgctttcctggcttggtctatcttgccacgttcaaccaagctgctgggtgtgtcggatatgaggaaggcaccaattgtcatcacggcttca |
33588275 |
T |
|
| Q |
713 |
ggaaccacggctaagccaagagagattcgccatcccca |
750 |
Q |
| |
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|| ||||| |||| |||||||||| |||||| ||||| |
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| T |
33588274 |
ggcaccactgctagtccaagagagagtcgccagcccca |
33588237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 416 - 750
Target Start/End: Complemental strand, 33595746 - 33595409
Alignment:
| Q |
416 |
aggttaggtgcatagaatgcaaccatgttgatccccgtgagttgttgaaaaagcggaatagcaactgctatcaccaagtgaggtcgatattgtctctcca |
515 |
Q |
| |
|
||||| |||| |||||| || || ||||||||||| || | |||||||||| || || | || ||| || |||||||||||||||||||||||||| | |
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| T |
33595746 |
aggtttggtgaatagaaagcgacaatgttgatccctgtaaactgttgaaaaaatgggattgaaaatgccatgaccaagtgaggtcgatattgtctctcaa |
33595647 |
T |
|
| Q |
516 |
atatggtcaaaaaaggctcttgcttcaaagattttgcatattgtgattgtttaacaagttcttctaactcgggttcaacat---tgtctgagcctctgat |
612 |
Q |
| |
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||||||||| ||| |||||||| | || | ||| | | || || |||| ||||||||||||||||| ||||||| || ||| |||||||| |
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|
| T |
33595646 |
atatggtcataaatggctcttgttgcactgctttcgaaatttctgtccacttaaagagttcttctaactcgggctcaacatcaatggatgatcctctgat |
33595547 |
T |
|
| Q |
613 |
tttatgcaaagcttttctggcttcatctatcttcccacggtccaccaaactgtttggtgtgtcgcatataattaaggcgccgatagtgatcaatgctgct |
712 |
Q |
| |
|
||| ||||| ||||| ||||||| |||||||| ||||| || ||||| ||| | ||||||||| |||| | ||||| || || || |||| ||| | |
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| T |
33595546 |
tttttgcaatgctttcctggcttggtctatcttgccacgttcaaccaagctgctgggtgtgtcggatatgaggaaggcaccaattgtcatcacggctcca |
33595447 |
T |
|
| Q |
713 |
ggaaccacggctaagccaagagagattcgccatcccca |
750 |
Q |
| |
|
|| ||||| |||| |||||||||| |||||| ||||| |
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|
| T |
33595446 |
ggcaccactgctagtccaagagagagtcgccagcccca |
33595409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 416 - 750
Target Start/End: Complemental strand, 33602877 - 33602540
Alignment:
| Q |
416 |
aggttaggtgcatagaatgcaaccatgttgatccccgtgagttgttgaaaaagcggaatagcaactgctatcaccaagtgaggtcgatattgtctctcca |
515 |
Q |
| |
|
||||| |||| |||||| || || ||||||||||| || | |||||||||| || || | || ||| || |||||||||||||||||||||||||| | |
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|
| T |
33602877 |
aggtttggtgaatagaaagcgacaatgttgatccctgtaaactgttgaaaaaatgggattgaaaatgccatgaccaagtgaggtcgatattgtctctcaa |
33602778 |
T |
|
| Q |
516 |
atatggtcaaaaaaggctcttgcttcaaagattttgcatattgtgattgtttaacaagttcttctaactcgggttcaacat---tgtctgagcctctgat |
612 |
Q |
| |
|
||||||||| ||| |||||||| | || | ||| | | || || |||| ||||||||||||||||| ||||||| || ||| |||||||| |
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|
| T |
33602777 |
atatggtcataaatggctcttgttgcactgctttcgaaatttctgtccacttaaagagttcttctaactcgggctcaacatcaatggatgatcctctgat |
33602678 |
T |
|
| Q |
613 |
tttatgcaaagcttttctggcttcatctatcttcccacggtccaccaaactgtttggtgtgtcgcatataattaaggcgccgatagtgatcaatgctgct |
712 |
Q |
| |
|
||| ||||| ||||| ||||||| |||||||| ||||| || ||||| ||| | ||||||||| |||| | ||||| || || || |||| ||| | |
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|
| T |
33602677 |
tttttgcaatgctttcctggcttggtctatcttgccacgttcaaccaagctgctgggtgtgtcggatatgaggaaggcaccaattgtcatcacggctcca |
33602578 |
T |
|
| Q |
713 |
ggaaccacggctaagccaagagagattcgccatcccca |
750 |
Q |
| |
|
|| ||||| |||| |||||||||| |||||| ||||| |
|
|
| T |
33602577 |
ggcaccactgctagtccaagagagagtcgccagcccca |
33602540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 416 - 504
Target Start/End: Complemental strand, 33609290 - 33609202
Alignment:
| Q |
416 |
aggttaggtgcatagaatgcaaccatgttgatccccgtgagttgttgaaaaagcggaatagcaactgctatcaccaagtgaggtcgata |
504 |
Q |
| |
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|||||||||| |||||| || || ||||||||||| || |||||||| |||| || || |||| ||| |||||||||||||||||||| |
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|
| T |
33609290 |
aggttaggtgaatagaaagcgacgatgttgatcccggtaagttgttggaaaaatgggattgcaaatgccatcaccaagtgaggtcgata |
33609202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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