View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16133_high_11 (Length: 245)
Name: NF16133_high_11
Description: NF16133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16133_high_11 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-128; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 11 - 245
Target Start/End: Complemental strand, 44817315 - 44817081
Alignment:
| Q |
11 |
atggcaccttaacctataaaatgacaataaatgaaaggcatataacatctactcttgttgaacaattattttacagcaatgaaaataatcaccaacaaaa |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44817315 |
atggcaccttaacctataaaatgacaataaatgaaaggcatataacatctactcttgttgaacaattattttacagcaatgaaaataatcaccaacaaaa |
44817216 |
T |
|
| Q |
111 |
aatctcaggtatgatgtatcaactcaatgacaataatattcttttacaaagaatcagatcttattgggaatatagcaattgagtacataaggaaaaggac |
210 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44817215 |
aatctcaggtatgatgtatcaacccaatgacaataatattcttttacaaagaatcagatcttattgggaatatagcaattgagtacataaggaaaaggac |
44817116 |
T |
|
| Q |
211 |
atggattaaaaaataaaatctatcgttatgactcc |
245 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
44817115 |
atggattaaaaaataaaatctatcgttatgactcc |
44817081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University