View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16133_high_4 (Length: 428)
Name: NF16133_high_4
Description: NF16133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16133_high_4 |
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| [»] scaffold0148 (2 HSPs) |
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| [»] scaffold0280 (1 HSPs) |
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Alignment Details
Target: scaffold0148 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: scaffold0148
Description:
Target: scaffold0148; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 196 - 405
Target Start/End: Complemental strand, 27710 - 27501
Alignment:
| Q |
196 |
agtgccaggcttactcatatggtcaggtccctgataagcagcagcgtggtcttattccttcaaactgttggatctggacacaaagtttaactactcttaa |
295 |
Q |
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| T |
27710 |
agtgccaggcttactcatatgctcaagtccctgataagcagcagcgtggtcttattccttcaaactgttggatctggacacacagtttaactactcttaa |
27611 |
T |
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| Q |
296 |
agaagagtatactagttgggatgatgatcgtagactcattatcctagttgataaattagacataggtatgcatatgatgattaaattagagacatatttc |
395 |
Q |
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| T |
27610 |
agaagagtatactagttgggatgatgatcgtagactcattatcctagttgataaattagacataggtatgcatatgatgattaaattagagacatatttc |
27511 |
T |
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| Q |
396 |
tctcttcttc |
405 |
Q |
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|||||||||| |
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| T |
27510 |
tctcttcttc |
27501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0148; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 14 - 141
Target Start/End: Complemental strand, 27898 - 27771
Alignment:
| Q |
14 |
caatgataaccacggagaggaagattcttcactacattgtacgaggagaaaaacaacattctgtactgaaaatggcacggctttcttgaatttaaccatg |
113 |
Q |
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| T |
27898 |
caatgataaccagggagaggaagattcttcacgacattgtacgaggagaaaaacaacattctgtactgaaaatgacacgaagttcttgaacttgaccatg |
27799 |
T |
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| Q |
114 |
attaaaacaggaaggccggataaaaagg |
141 |
Q |
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| T |
27798 |
attaaaacaggaaggccagatataaagg |
27771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0280 (Bit Score: 101; Significance: 6e-50; HSPs: 1)
Name: scaffold0280
Description:
Target: scaffold0280; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 253 - 385
Target Start/End: Complemental strand, 2617 - 2485
Alignment:
| Q |
253 |
cttcaaactgttggatctggacacaaagtttaactactcttaaagaagagtatactagttgggatgatgatcgtagactcattatcctagttgataaatt |
352 |
Q |
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| T |
2617 |
cttcaaattgttggatctggacacaaagtttaactactcttaaagaagagtatactaattgggattatgatcgtagactcattgtcctagttgataaatc |
2518 |
T |
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| Q |
353 |
agacataggtatgcatatgatgattaaattaga |
385 |
Q |
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| T |
2517 |
agaggtaggtatgcatgtgatgattaaattaga |
2485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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