View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16133_low_11 (Length: 310)
Name: NF16133_low_11
Description: NF16133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16133_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 51546790 - 51547082
Alignment:
| Q |
1 |
ctccatatcctgaagtatgcttcaattcatcaaaactctccatctcaatagacataaatccaaacatcatttacatccttcttcattccctccaagtatc |
100 |
Q |
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| T |
51546790 |
ctccatatcctgaagtatgcttcaattcatcaaaactctccatctcaatagacataaatccaaacatcattaacatccttcttcattccctccaagtatc |
51546889 |
T |
|
| Q |
101 |
aatatctgaaaccacaaagctctctaatcaattcaacaatgctcactcaaacatcgtagagaacaaaagaggagctatacaagattgcgaagaacttcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51546890 |
aatatctgaaaccacaaagctctctaatcaattcaacaatgctcactcaaacatcgtagagaacaaaagaggagctatacaagattgcgaagaacttcaa |
51546989 |
T |
|
| Q |
201 |
caatctaccttatcttc-actaaaaagatcattgtctggaattcgttcatcaaaatctagaaagttagttgatgcaagaacttatctaagtgc |
292 |
Q |
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| T |
51546990 |
caatctaccttatcttcaactaaaaagatcattgtctggaattcgttcatcaaaatctagaaagttagttgatgcaagaacttatctaagtgc |
51547082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 147 - 197
Target Start/End: Complemental strand, 18762387 - 18762337
Alignment:
| Q |
147 |
tcaaacatcgtagagaacaaaagaggagctatacaagattgcgaagaactt |
197 |
Q |
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| T |
18762387 |
tcaaacatcgtaaagaacaaaagaggagttatacaagattgcaaagaactt |
18762337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 21 - 129
Target Start/End: Original strand, 19474703 - 19474811
Alignment:
| Q |
21 |
ttcaattcatcaaaactctccatctcaatagacataaatccaaacatcatttacatccttcttcattccctccaagtatcaatatctgaaaccacaaagc |
120 |
Q |
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| T |
19474703 |
ttcaactcattaaaactttccatatccataaacataaacccaaacatcataacctaccttcttcattcacttcaactagcaatatccgaaaccacaaagc |
19474802 |
T |
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| Q |
121 |
tctctaatc |
129 |
Q |
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|||| |||| |
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| T |
19474803 |
tctcgaatc |
19474811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 232
Target Start/End: Complemental strand, 15992344 - 15992263
Alignment:
| Q |
151 |
acatcgtagagaacaaaagaggagctatacaagattgcgaagaacttcaacaatctaccttatcttcactaaaaagatcatt |
232 |
Q |
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| T |
15992344 |
acatcatagagaacaaaagaggagatatataagattgcaaagaacttcatgaatcaactttgacttcattagaaagatcatt |
15992263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 232
Target Start/End: Original strand, 15992477 - 15992546
Alignment:
| Q |
163 |
acaaaagaggagctatacaagattgcgaagaacttcaacaatctaccttatcttcactaaaaagatcatt |
232 |
Q |
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| T |
15992477 |
acaaaagaggagttatacaagattgcaaagaacttcatgaatcaactttgacttcattagaaagatcatt |
15992546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 199
Target Start/End: Original strand, 12283731 - 12283779
Alignment:
| Q |
151 |
acatcgtagagaacaaaagaggagctatacaagattgcgaagaacttca |
199 |
Q |
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||||| ||||||||||| |||||| ||||||||||||| |||||||||| |
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| T |
12283731 |
acatcatagagaacaaatgaggagttatacaagattgcaaagaacttca |
12283779 |
T |
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