View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16133_low_12 (Length: 267)
Name: NF16133_low_12
Description: NF16133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16133_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 17 - 258
Target Start/End: Complemental strand, 8337782 - 8337540
Alignment:
| Q |
17 |
agtactaaactttgtttgttctttaagagttttcttttgcaaaactctttaagaaaaacatcaaaattatatagcttagtcttgtttctaagagtggaga |
116 |
Q |
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| T |
8337782 |
agtactaaactttgtttgttctttaagagttttcttttacaaaactctttaagaaaaacatcaaaattatatagcctagtcttgtttctaagagtggaga |
8337683 |
T |
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| Q |
117 |
agttgcattaaatggaaatgaaaatattgttattatatttactacacattttgatcactattataagcattaaaccat-ttttaagttcattcaataaat |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
8337682 |
agttgcattaaatggaaatgaaaatattgttattatatttactacacatttcgatcactattataagcattaaaccattttttaagttcattcaataaat |
8337583 |
T |
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| Q |
216 |
gatgtagacagcatattatatagacatcatacatcaattcatc |
258 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8337582 |
gatgtagacagcatattatatagacatcatacatcaattcatc |
8337540 |
T |
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Back To:
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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 221
Target Start/End: Complemental strand, 3106080 - 3106028
Alignment:
| Q |
169 |
gatcactattataagcattaaaccatttttaagttcattcaataaatgatgta |
221 |
Q |
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|||||||||||||| || |||| | ||||| ||||||||||||||||||||| |
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| T |
3106080 |
gatcactattataaacaaaaaacaacttttaggttcattcaataaatgatgta |
3106028 |
T |
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