View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16133_low_2 (Length: 553)
Name: NF16133_low_2
Description: NF16133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16133_low_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 467; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 1 - 536
Target Start/End: Original strand, 18538431 - 18538966
Alignment:
| Q |
1 |
atactcttaattgaattaatcaaggatgaaaactaaacatttaatctttgaactctttatttgtgcactaatgtttatctctgttatagaaattgagcaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |
|
|
| T |
18538431 |
atactcttaattgaattaatcaaggatgaaaaccaaacatttaatctttgaactctttatttgtacactaatgtttatctctgttgtagaaattgagcaa |
18538530 |
T |
|
| Q |
101 |
tctaaagatgtgaaacaatgtatgtctgtgtatattaattgaatgcacaaattttccttattttattgtacttaataataaaaagtgtttgttaatttgc |
200 |
Q |
| |
|
|||||| ||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18538531 |
tctaaaaatgggaaacagtgtatgtatgtgtatattaattgaatgcacaaattttccttattttattgtacttaataataaaaagtgtttgttaatttgc |
18538630 |
T |
|
| Q |
201 |
agttggggcaacaaaagacgtcatatcaaaagttgagacagttctatggaaaccatnnnnnnnaggatggataaactatggagaaaaaggtggtgcagga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18538631 |
agttggggcaacaaaagacgtcatatcaaaagttgagacagttccatggaaaccatgggggggaggatggataaactatggagaaaaaggtggtgcagga |
18538730 |
T |
|
| Q |
301 |
agaaaaaatggtgaacaaggttcaggaggaaatcatggtggagaaagttcacaaggtgggggtgaacaaaaaggaggtagcgaaaatggagggaatgagg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18538731 |
agaaaaaatggtgaacaaggttcaggaggaaatcgtggtggaaaaagttcacaaggtgggggtgaacaaaaaggaggtagcgaaaatggagggaatgagg |
18538830 |
T |
|
| Q |
401 |
aaccataatgaaaaccagatgtatgcatgtgtatactgtatccaagataatatttaaaataaaatcatggactttattttacactatgtctaatttttaa |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
18538831 |
aaccataatgaaaaccagatgtatgcatgtgtgtactgtatccaagataatatttaaaataaaatcatggactttattttaccctatgtctaatttttaa |
18538930 |
T |
|
| Q |
501 |
ttggaggaacatctttctttaagttaatatgcattt |
536 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
18538931 |
ttggaggaacatctttctttaagttaatatgcattt |
18538966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 123
Target Start/End: Original strand, 18549170 - 18549239
Alignment:
| Q |
54 |
tctttatttgtgcactaatgtttatctctgttatagaaattgagcaatctaaagatgtgaaacaatgtat |
123 |
Q |
| |
|
||||| ||||||||||| |||||||||||||| | || ||||| ||| ||||||| |||||||||||| |
|
|
| T |
18549170 |
tctttgtttgtgcactatattttatctctgttatggcaactgagccatccaaagatgagaaacaatgtat |
18549239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University