View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16133_low_3 (Length: 440)
Name: NF16133_low_3
Description: NF16133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16133_low_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 12 - 423
Target Start/End: Original strand, 7964234 - 7964647
Alignment:
| Q |
12 |
atgaaccaactattggaatgtggcatttccagaggagtggttccttaatttgttattaagtactttctagttttattaggaaataggttataattttatt |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7964234 |
atgaaccaactattggaatgtggcatttccagaggagtggttccttaatttgttatcaagtactttctagttttattaggaaataggttataattttatt |
7964333 |
T |
|
| Q |
112 |
tcatgattgagcaggcaaggagtttaccaactgataagctcaggataatttacatctctgtaaatggtgccgtatatttaatccaggtatctgtctcatt |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7964334 |
tcatgattgagcaggcaaggagtttaccaactgataagctcaggataatttacatctctgtaaatggtgccgtatatttaatccaggtatctgtctcatt |
7964433 |
T |
|
| Q |
212 |
tcttgttgcaaacaccaatatatacttaagcttatccgctctaattttcttattggatttccttagtgtttgttttgatttacaatgaatcttcctataa |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
7964434 |
tcttgttgcaaacaccaatatatacttaagcttatccgctctaattttcttattggatttccttagtgtttgttttgatttacaatgaatctccctataa |
7964533 |
T |
|
| Q |
312 |
atttggtgtttggcctaattatattctaggtccagagcattctattttgaagcatgcttttgttttgaattttatataatgatctgtt--agtgtctgca |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
7964534 |
atttggtgtttggcctaattatattctaggtccggagcattctattttgaagcatgcttttgttttgaattttatataatgatctgttagagtgtctgca |
7964633 |
T |
|
| Q |
410 |
aatttgacactttt |
423 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
7964634 |
aatttgacactttt |
7964647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 114 - 212
Target Start/End: Original strand, 55084783 - 55084881
Alignment:
| Q |
114 |
atgattgagcaggcaaggagtttaccaactgataagctcaggataatttacatctctgtaaatggtgccgtatatttaatccaggtatctgtctcattt |
212 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||||| ||||||||| || || |||||| |||| | ||| | |||||||||||| ||||||| |
|
|
| T |
55084783 |
atgactgagcaggcaaggagtttaccaactgatatgctcaagataatttatatttcaataaatgctgccttgtatattatccaggtatctaactcattt |
55084881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University