View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16133_low_6 (Length: 427)
Name: NF16133_low_6
Description: NF16133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16133_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 30 - 413
Target Start/End: Complemental strand, 43238546 - 43238164
Alignment:
| Q |
30 |
caaaatgaaaaattaccctttcaaagaatattgaatttgagttatgaataaataaacgcgtaacattatgagaaataaactattggatgattatttgctc |
129 |
Q |
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| T |
43238546 |
caaaatgaaaaattacccttttaaagaatattgaatttgagttatgaataaataaacgcgtaacattatgagagataaactgttggatgattatttgctc |
43238447 |
T |
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| Q |
130 |
acatatagagaaaatgtatgtgacagttttgaaatgnnnnnnnntcatgctatgattttaaaatatgaaaacatatgtataaatataattagtaaatatt |
229 |
Q |
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| T |
43238446 |
acatatagagaaaatgaatgtgacagttttgaaatgaaaaaaa-tcatactatgattttaaaatatgaaaacatatgtataaatataattagtaaatatt |
43238348 |
T |
|
| Q |
230 |
ggtgtgtcttcaatttattttggtataaaataatataannnnnnnattctccaatttttgcttgatgataattatgtctttaatttaattatcactcttg |
329 |
Q |
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| T |
43238347 |
gatgtgtcttcaatttattttggtataaaataatataatttttttattctccaatttttgcttgatgataatgatgtctttaatttaattatcactcttg |
43238248 |
T |
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| Q |
330 |
cattgatttatttttatataaattttgagtatataattttgctcccataaattaaaatgtatggatccgtccatgctataaatg |
413 |
Q |
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| T |
43238247 |
cattgatttatttttatataaattttgagtatataattttgctcccataaattaaaatgtatggatccgtccctgctataaatg |
43238164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 30 - 408
Target Start/End: Complemental strand, 27428782 - 27428408
Alignment:
| Q |
30 |
caaaatgaaaaattaccctttcaaagaa-tattgaatttgagttatgaataaataaacgcgtaacattatgagaaataaactattggatgattatttgct |
128 |
Q |
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||||||||||||||||||| |||| || ||||||||| || |||||||||||||||||||||| ||||||||| ||||| | |||||||||||||||| |
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| T |
27428782 |
caaaatgaaaaattaccctcacaaaaaaatattgaattggatttatgaataaataaacgcgtaaaattatgagagataaattggtggatgattatttgct |
27428683 |
T |
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| Q |
129 |
cacatatagagaaa---atgtatgtgacagttttgaaatgnnnnnnnntcatgctatgattttaaaatatgaaaacatatgtataaatataattagtaaa |
225 |
Q |
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|||||||||||||| |||||||||| ||| |||||||| ||||||||| ||||||||||||||| ||||| ||||||||||||||||| | |
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| T |
27428682 |
cacatatagagaaaaatatgtatgtgatagtgttgaaatg--aaaaaatcatgctataattttaaaatatgaagacatacatataaatataattagtaga |
27428585 |
T |
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| Q |
226 |
tattggtgtgtcttcaatttattttggtataaaataatataannnnnnnattctccaatttttgcttgatgataattatgtctttaatttaattatcact |
325 |
Q |
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||||| ||||||| ||||| |||||||| ||||| |||||| |||||||||||||||| | ||||||||||||||||| | ||||||| |
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| T |
27428584 |
tattgatgtgtctccaatt--ttttggtacaaaatgatataatttttgtattctccaatttttgcatcttgataattatgtctttatt----gtatcact |
27428491 |
T |
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| Q |
326 |
cttgcattgatttatttttatataaattttgagtatataattttgctcccataaattaaaatgtatggatccgtccatgctat |
408 |
Q |
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| T |
27428490 |
cttgcattgatttatttttatataaatgttgagtataaaattttgtccccgcaaatcaaaatttctagatccgtccctgctat |
27428408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 215 - 387
Target Start/End: Complemental strand, 7339435 - 7339268
Alignment:
| Q |
215 |
taattagtaaatattggtgtgtcttcaatttattttggtataaaataatataannnnnnnattctccaatttttgcttgatgataattatgtctttaatt |
314 |
Q |
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||||||||| ||||||||||||||||||||| ||| ||||||||| |||||| |||||| ||||||| | | ||||||||||||||||| || |
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| T |
7339435 |
taattagtagatattggtgtgtcttcaattt-tttgagtataaaatgatataatttttctattctctaattttttttgggtgataattatgtctttattt |
7339337 |
T |
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| Q |
315 |
taattatcactcttgcattgatttatttttatataaattttgagtatataattttgctcccataaattaaaat |
387 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||| |
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| T |
7339336 |
ta----tcactcttgcattgatttatttttatataaattttgagtatataattttgcccccacaaatcaaaat |
7339268 |
T |
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