View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16133_low_7 (Length: 383)

Name: NF16133_low_7
Description: NF16133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16133_low_7
NF16133_low_7
[»] chr2 (1 HSPs)
chr2 (13-363)||(8337044-8337396)


Alignment Details
Target: chr2 (Bit Score: 243; Significance: 1e-134; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 13 - 363
Target Start/End: Original strand, 8337044 - 8337396
Alignment:
Q  13 attatactctccataagtagataatttgaaatttatataacgtatatttggtaatgtaatt----gttaatggannnnnnnnnnnnnngaggaaaattgt 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||               ||||||||||||    
T  8337044 attatactctccataagtagataatttgaaatttatataacgtatatttggtaatgtaattaattgttaatgg--tttttttttttttgaggaaaattgt 8337141  T
Q  109 taatggaaatgattctcgagatactttatattttagatgctatggtatatgataaaatcaaattatannnnnnngctttaaatcatttttcatcattttg 208  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||       ||||||||||||||||||| ||||||    
T  8337142 taatggaaatgattctcgagatattttatattttagatgttatggtatatgataaaatcaaattatatttttttgctttaaatcatttttcattattttg 8337241  T
Q  209 atttaatattctcgagaaaaaattattctcaagagattttatattttagaagttatggtaaatagtaaaatcaaaatcaaatttgatgttttgaatcata 308  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  8337242 atttaatattctcgagaaaaaatgattctcaagagattttatattttagaagttatggtaaatagtaaaatcaaaatcaaatttgatgttttgaatcatt 8337341  T
Q  309 tttcattatttccatttaatgcaaaatatcccttcacaaagactatgctagacac 363  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  8337342 tttcattatttccatttaatgcaaaatatcccttcacaaagactatgctatacac 8337396  T

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