View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16133_low_9 (Length: 354)
Name: NF16133_low_9
Description: NF16133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16133_low_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 13 - 70
Target Start/End: Complemental strand, 33203420 - 33203363
Alignment:
| Q |
13 |
gagatgaaggatgaaggtttcaacaaagaatgaggtgatggagcttatctaaatagtc |
70 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
33203420 |
gagatgaatgatgaaggtttcaacaaagaatgaggtgatgaagcttatctaaatagtc |
33203363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 13 - 70
Target Start/End: Complemental strand, 33203487 - 33203430
Alignment:
| Q |
13 |
gagatgaaggatgaaggtttcaacaaagaatgaggtgatggagcttatctaaatagtc |
70 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
33203487 |
gagacgaaggatgaaggtttcaacagagaatgaggtgatggagcttatctaagtagtc |
33203430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University