View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16134_high_8 (Length: 220)

Name: NF16134_high_8
Description: NF16134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16134_high_8
NF16134_high_8
[»] chr3 (1 HSPs)
chr3 (138-220)||(36659324-36659405)
[»] chr5 (3 HSPs)
chr5 (174-220)||(36477858-36477904)
chr5 (174-220)||(73653-73699)
chr5 (174-220)||(11824585-11824631)
[»] chr6 (2 HSPs)
chr6 (175-220)||(12143682-12143727)
chr6 (175-220)||(1856890-1856935)


Alignment Details
Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 138 - 220
Target Start/End: Complemental strand, 36659405 - 36659324
Alignment:
Q  138 ctccggtccttattataagaaacaaaattnnnnnnncatcaaaatcaatgcaatcattaattaatgtaactttataaatattt 220  Q
    ||||||||||||||||||||||||||| |       ||||||||||||| ||||| ||||||||||||||||| | |||||||    
T  36659405 ctccggtccttattataagaaacaaaacttaaaaa-catcaaaatcaatacaatcgttaattaatgtaactttttgaatattt 36659324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 174 - 220
Target Start/End: Original strand, 36477858 - 36477904
Alignment:
Q  174 catcaaaatcaatgcaatcattaattaatgtaactttataaatattt 220  Q
    ||||||| ||||||||||||||||||||||||||||| | |||||||    
T  36477858 catcaaattcaatgcaatcattaattaatgtaactttttgaatattt 36477904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 220
Target Start/End: Complemental strand, 73699 - 73653
Alignment:
Q  174 catcaaaatcaatgcaatcattaattaatgtaactttataaatattt 220  Q
    ||||||||||| ||||||||||||||| ||||||||| | |||||||    
T  73699 catcaaaatcagtgcaatcattaattagtgtaacttttttaatattt 73653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 220
Target Start/End: Complemental strand, 11824631 - 11824585
Alignment:
Q  174 catcaaaatcaatgcaatcattaattaatgtaactttataaatattt 220  Q
    ||||||||||||| |||||||||||| || ||||||| |||||||||    
T  11824631 catcaaaatcaatacaatcattaattgatttaactttttaaatattt 11824585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 12143682 - 12143727
Alignment:
Q  175 atcaaaatcaatgcaatcattaattaatgtaactttataaatattt 220  Q
    ||||||| |||||||||||||||||||||||||||| | |||||||    
T  12143682 atcaaaaccaatgcaatcattaattaatgtaactttttgaatattt 12143727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 175 - 220
Target Start/End: Complemental strand, 1856935 - 1856890
Alignment:
Q  175 atcaaaatcaatgcaatcattaattaatgtaactttataaatattt 220  Q
    ||||||||||| | |||||||||||||||||| ||| |||||||||    
T  1856935 atcaaaatcaacgaaatcattaattaatgtaattttttaaatattt 1856890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University