View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16134_low_1 (Length: 748)
Name: NF16134_low_1
Description: NF16134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16134_low_1 |
 | |
|
| [»] scaffold0627 (3 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 713; Significance: 0; HSPs: 24)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 713; E-Value: 0
Query Start/End: Original strand, 18 - 738
Target Start/End: Original strand, 8528952 - 8529672
Alignment:
| Q |
18 |
atgatatgacaatatggcagcaccttcttcaaagtgttttatcggccagcttaaaccataaccccgtggaacacgatccaaaggattgaacgaagtatcg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8528952 |
atgatatgacaatatggcagcaccttcttcaaagtgttttatcggccagcttaaaccataaccccgtggaacacgatccaaaggattgaacgaagtatcg |
8529051 |
T |
|
| Q |
118 |
atgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattgaaacattagatataaaggtcggatcacaaatgtatagaaatc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8529052 |
atgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattgaaacattagatataaaggtcggatcacaaatgtatagaaatc |
8529151 |
T |
|
| Q |
218 |
cctttaattctcccatgctaataggcctacaacaaaaaacattatgatttccaaacacatgtggaggagaaggaaatgactgcaacctctcattttcaaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
8529152 |
cctttaattctcccatgctaataggcctacaacaaaaaacattatgatttccaaacacatgtggaggagaaggaaacgactgcaacctctcattttcaaa |
8529251 |
T |
|
| Q |
318 |
gcagaaaaccaatattgacctttgctgaccctcaaatcttatccaatgaagtgcaccattcacacaagtgggatactttagactcgaaaaagaaatttga |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8529252 |
gcagaaaaccaatattgacctttgctgaccctcaaatcttatccaatgaagtgcaccattcacacaagtgggatactttagactcgaaaaagaaatttga |
8529351 |
T |
|
| Q |
418 |
ggatccacttcaacatttctccaggatgttgttccaagtgtgtttatctcaaggatcacacgctcaaacacccactgattggcatgtttaacatgtctta |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8529352 |
ggatccacttcaacatttctccaggatgttgttccaagtgtgtttatctcaaggatcacacgctcaaacacccactgattggcatgtttaacatgtctta |
8529451 |
T |
|
| Q |
518 |
tccacacgcttattaccttatattcattagttttaggttggaatccaaaaccagcttgaccttgcattcttactcgagttcgatttgtagtagattcagg |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8529452 |
tccacacgcttattaccttatattcattagttttaggttggaatccaaaaccagcttgaccttgcattcttactcgagttcgatttgtagtagattcagg |
8529551 |
T |
|
| Q |
618 |
aagtcttatgaactcccccgtgactgggttgcagatcactaatgggtttccaaaagatgggtcagacaaacaaagtaaaccattgcaagaattcacaata |
717 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8529552 |
aagtcttatgaactcccccgtgactgggttgcagatcactattgggtttccaaaagatgggtcagacaaacaaagtaaaccattgcaagaattcacaata |
8529651 |
T |
|
| Q |
718 |
tcaaacttatcaatatctctg |
738 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
8529652 |
tcaaacttatcaatatctctg |
8529672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 18 - 737
Target Start/End: Original strand, 8535507 - 8536235
Alignment:
| Q |
18 |
atgatatgacaatatggcagcaccttcttcaaagtgttttatcggccagcttaaaccataaccccgtggaacacga---tccaaaggattgaacgaagta |
114 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||| ||| |||||||||| |||||| |
|
|
| T |
8535507 |
atgatataacaatatggcagcaccttcttcaaagtgttttattggccagcttaaaccatatctccgtggaacacgactttccgaaggattgaatgaagta |
8535606 |
T |
|
| Q |
115 |
tcgatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattgaaacattagatataaaggtcggatcacaaatgtatagaa |
214 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||| |||| |
|
|
| T |
8535607 |
tcaatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattgaaacatcagataaaaaggtcgaatcacaaatgtaaagaa |
8535706 |
T |
|
| Q |
215 |
atccctttaattctcccatgctaataggcctacaacaaaaaac------attatgatttccaaacacatgtggaggagaaggaaatgactgcaacctctc |
308 |
Q |
| |
|
|||||||||||||||||||||||||| | ||| || || || ||||||||||||||||| |||||||||||||||||||||| || | |||| |
|
|
| T |
8535707 |
atccctttaattctcccatgctaatatgtctattactaagaaatccattattatgatttccaaacatctgtggaggagaaggaaatgacttcagcgtctc |
8535806 |
T |
|
| Q |
309 |
attttcaaagcagaaaaccaatattgacctttgctgaccctcaaatcttatccaatgaagtgcaccattcacacaagtgggatactttagactcgaaaaa |
408 |
Q |
| |
|
| ||||||||||||||| |||||||||||||||| |||| |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8535807 |
actttcaaagcagaaaatcaatattgacctttgcagaccatcaaatcttagccaatgtagtgcaccattcacacaagtgggatactttagactcgaaaaa |
8535906 |
T |
|
| Q |
409 |
gaaatttgaggatccacttcaacatttctccaggatgttgttccaagtgtgtttatctcaaggatcacacgctcaaacacccactgattggcatgtttaa |
508 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||| ||||| ||||||| |||||| |
|
|
| T |
8535907 |
gaaatttgaggatccacttcaacatttctccaggatggggttccaagtgtgtttatctcaagggtcaaacgctcaaactcccacacattggcacgtttaa |
8536006 |
T |
|
| Q |
509 |
catgtcttatccacacgcttattaccttatattcattagttttaggttggaatccaaaaccagcttgaccttgcattcttactcgagttcgatttgtagt |
608 |
Q |
| |
|
||||||| | ||||| | |||| ||||||||||||||||||||||||||||| |||||||||||||| ||| || ||||||| ||| || ||| | | | |
|
|
| T |
8536007 |
catgtctcacccacatgtttatcaccttatattcattagttttaggttggaaaccaaaaccagcttgtcctagccttcttacccgattttgatccgcaat |
8536106 |
T |
|
| Q |
609 |
agattcaggaagtcttatgaactcccccgtgactgggttgcagatcactaatgggtttccaaaagatgggtcagacaaacaaagtaaaccattgcaagaa |
708 |
Q |
| |
|
|||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8536107 |
agattcaggaagtcttataaactccccagtgactgggttgcagatcactaatgggtttccaaaagatgggtcagacaaacaaagtaaaccattgcaagaa |
8536206 |
T |
|
| Q |
709 |
ttcacaatatcaaacttatcaatatctct |
737 |
Q |
| |
|
|||||||||||||||||||||| |||||| |
|
|
| T |
8536207 |
ttcacaatatcaaacttatcaaaatctct |
8536235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 21 - 730
Target Start/End: Complemental strand, 1600380 - 1599679
Alignment:
| Q |
21 |
atatgacaatatggcagcaccttcttcaaagtgttttatcggccagcttaaaccataaccccgtggaacacgatccaaaggattgaacgaagtatcgatg |
120 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| ||||||||| |||||| ||| || || || |||||||||| ||||||||| |
|
|
| T |
1600380 |
atataacaatatggcagcaccttcttcaaagtgttgtatcggcca---taaacccgaacaccatgaaa---------aaggattgaatgaagtatcgtac |
1600293 |
T |
|
| Q |
121 |
ttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattgaaacattagatataaaggtcggatcacaaatgtatagaaatccct |
220 |
Q |
| |
|
||||||| |||||||||||||||| ||||||||||||| |||||||||||||||| ||||| ||||| |||||| | ||||||||||| |||||||||| |
|
|
| T |
1600292 |
ttgtaaaccttagtccatgattcttcaatgccatattccttcataacccacattggaacatcagataaaaaggtag--tcacaaatgtaaagaaatccct |
1600195 |
T |
|
| Q |
221 |
ttaattctcccatgctaataggcct---acaacaaaaaacattat---gatttccaaacacatgtggaggagaaggaaatgactgcaacctctcattttc |
314 |
Q |
| |
|
|||||||||||||||||| | | || || |||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
1600194 |
ttaattctcccatgctaacatggctgttaccacaagttccattattatgatttccaaactcatgtggaggagaaggaaatgactgcaacctctcactttc |
1600095 |
T |
|
| Q |
315 |
aaagcagaaaaccaatattgacctttgctgaccctcaaatcttatccaatgaagtgcaccattcacacaagtgggatactttagactcgaaaaagaaatt |
414 |
Q |
| |
|
||| |||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||| || || ||||||||||| |
|
|
| T |
1600094 |
aaaacagaaaaccaatattgacatttgctcaccctcatatcttatccaatgaagtgcaccattcacacaagtgggattcttaagcatccaaaaagaaatt |
1599995 |
T |
|
| Q |
415 |
tgaggatccacttcaacatttctccaggatgttgttccaagtgtgtttatctcaaggatcacacgctcaaacacccactgattggcatgtttaacatgtc |
514 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||| || || ||||||| ||||||||| || |
|
|
| T |
1599994 |
tgaggatccacttcaacatttctccaggatggtgttccaagtgtgtttatctcaaggatcacaatcttaaactccaacgcattggcacgtttaacatatc |
1599895 |
T |
|
| Q |
515 |
ttatccacacgcttattaccttatattcattagttttaggttggaatccaaaaccagcttgaccttgcattcttactcgagttcgatttgtagtagattc |
614 |
Q |
| |
|
| | || || | |||| ||||||||||||||||||||||||||||| |||||| ||||| | |||||| ||| ||| |||||| |||| | |||||||| |
|
|
| T |
1599894 |
tcaccctcatgtttatcaccttatattcattagttttaggttggaaaccaaaagcagctcgtccttgccttcctacccgagtttgattcgcggtagattc |
1599795 |
T |
|
| Q |
615 |
aggaagtcttatgaactcccccgtgactgggttgcagatcactaatgggtttccaaaagatgggtcagacaaacaaagtaaaccattgcaagaattcaca |
714 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1599794 |
aggaagtcttatgaactccccagtgattgggttgcagatcactaatgggtttccgaaatatgggtcagacaaacaaagtaaaccattgcaagaattcaca |
1599695 |
T |
|
| Q |
715 |
atatcaaacttatcaa |
730 |
Q |
| |
|
|||| ||||||||||| |
|
|
| T |
1599694 |
atattaaacttatcaa |
1599679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 18 - 729
Target Start/End: Complemental strand, 9074820 - 9074118
Alignment:
| Q |
18 |
atgatatgacaatatggcagcaccttcttcaaagtgttttatcggccagcttaaaccataaccccgtggaacacgat---ccaaaggattgaacgaagta |
114 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||| || || | || || ||||||||||||||||| |
|
|
| T |
9074820 |
atgatataacaatatggcagcaccttcttcaaagtgttttatcggcca---taaacctgaaccccatgtaataagacagcccgaaggattgaacgaagta |
9074724 |
T |
|
| Q |
115 |
tcgatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattgaaacattagatataaaggtcggatcacaaatgtatagaa |
214 |
Q |
| |
|
|| |||||||||| ||||||||||||||| |||| |||||||||||||||||||||| |||||||| ||||| ||| ||| ||||||||||| |||| |
|
|
| T |
9074723 |
tcaatgttgtaaactttagtccatgattcttcaataccatattcattcataacccacactgaaacatcagataaaaatgtccagtcacaaatgtaaagaa |
9074624 |
T |
|
| Q |
215 |
atccctttaattctcccatgctaataggccta-caacaaaa--aacattatgatttccaaacacatgtggaggagaaggaaatgactgcaacctctcatt |
311 |
Q |
| |
|
|||||||||||||||||||| || || |||||| | |||||| |||||||||||||| |||||||||||||||||||||||||||||| | |
|
|
| T |
9074623 |
atccctttaattctcccatgatatgtctgttatcaacaattccactattatggtttccaaacacatgcggaggagaaggaaatgactgcaacctctcact |
9074524 |
T |
|
| Q |
312 |
ttcaaagcagaaaaccaatattgacctttgctgaccctcaaatcttatccaatgaagtgcaccattcacacaagtgggatactttagactcgaaaaagaa |
411 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
9074523 |
ttcaaaacagaaaaacaatattgacctttgctgattttcatatcttatccaatgaagtgcaccattcacacaagtgggatactcgagactcaaaaaagaa |
9074424 |
T |
|
| Q |
412 |
atttgaggatccacttcaacatttctccaggatgttgttccaagtgtgtttatctcaaggatcacacgctcaaacacccactgattggcatgtttaacat |
511 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||| || ||||||| ||||| ||| |
|
|
| T |
9074423 |
atttgaggatccacttcaacatttctcaatattgttgttccaagtgtgtttatctgaaggatcacacggtc------------attggcacgtttaccat |
9074336 |
T |
|
| Q |
512 |
gtcttatccacacgcttattaccttatattcattagttttaggttggaatccaaaaccagcttgaccttgcattcttactcgagttcgatttgtagtaga |
611 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||| ||| ||||||||| ||||||||||| || |||| |
|
|
| T |
9074335 |
gtcttatccacattcttattaccttatattcattagtattaggttggaatccaaaaccaacttgtcctaccattcttacccgagttcgattcgtggtagc |
9074236 |
T |
|
| Q |
612 |
ttcaggaagtcttatgaactcccccgtgactgggttgcagatcactaatgggtttccaaaagatgggtcagacaaacaaagtaaaccattgcaagaattc |
711 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||| | |||||||| || ||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
9074235 |
ttcaggaagtcttatgaactcccctgtgactgggttgcagatcactgaagggtttccggtagttggttcagacaaacaaagtaaaccattgcaagaattc |
9074136 |
T |
|
| Q |
712 |
acaatatcaaacttatca |
729 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
9074135 |
acaatatcaaacttatca |
9074118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 113 - 489
Target Start/End: Original strand, 8641475 - 8641866
Alignment:
| Q |
113 |
tatcgatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattgaaacattagatataaaggtcg------gatcacaaat |
206 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||| | | | |||||||| |||||||||| |
|
|
| T |
8641475 |
tatcaatgttgtaagccttagtccatgattctccaatgccatattcattcataacccacactgtgacatcaaagaaaaaggtcgagtcacgatcacaaat |
8641574 |
T |
|
| Q |
207 |
gtatagaaatccctttaattctcccatgctaataggcctacaacaaaaaac---------attatgatttccaaacacatgtggaggagaaggaaatgac |
297 |
Q |
| |
|
||| ||||||||||||| ||||||||||||||| |||| || | || ||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
8641575 |
gtaaggaaatccctttaactctcccatgctaataagcctgttaccatgaattccattattattatgatttccaaacacatgtggaggagaaggaaataac |
8641674 |
T |
|
| Q |
298 |
tgcaacctctcattttcaaagcagaaaaccaatattgacctttgctgaccctcaaatcttatccaatgaagtgcaccattcacacaagtgggatacttta |
397 |
Q |
| |
|
| ||| |||||| |||| || |||||| |||||||||||||||| ||||||||| | || |||||||| ||| ||||||||||||||||||||| | |
|
|
| T |
8641675 |
ttcaatctctcactttccaaacagaaacataatattgacctttgctccccctcaaatttgattcaatgaagaacactattcacacaagtgggatacttaa |
8641774 |
T |
|
| Q |
398 |
gactcgaaaaagaaatttgaggatccacttcaacatttctccaggatgttgttccaagtgtgtttatctcaaggatcacacgctcaaacacc |
489 |
Q |
| |
|
||||||||| |||||| |||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8641775 |
gactcgaaatagaaatctgaggatccacttcaacatttctccatgatggtgctccaagtgtgtttatctcaaggatcacacgctcaaacacc |
8641866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 108 - 725
Target Start/End: Complemental strand, 2856897 - 2856268
Alignment:
| Q |
108 |
cgaagtatcgatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattgaaacattagatataaaggtcggatcacaaatg |
207 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| | | | | || ||||||| |
|
|
| T |
2856897 |
cgaagtatcaatgttgtaaacaatagtccatgattctccaatgccatattcattcataacccacattgtaacattctcgagagacgatctatgacaaatg |
2856798 |
T |
|
| Q |
208 |
tatagaaatccctttaattctcccatgctaataggc---ctacaacaaaaaacatt---atgatttccaaacacatgtggaggagaaggaaatgactgca |
301 |
Q |
| |
|
|| ||||||||||| |||||||||| ||||||||| ||| ||| |||| ||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2856797 |
taaagaaatcccttcaattctcccaatctaataggcatgctatggggaaatccattatcatgatttccaaacacatgtggaggagaaggaaacgactgca |
2856698 |
T |
|
| Q |
302 |
acctctcattttcaaagcagaaaaccaatattgacctttgctg---accctcaaatcttatccaatgaagtgcaccattcacacaagtgggatactttag |
398 |
Q |
| |
|
|||||||| ||||||| |||| |||||||||| |||| || | | |||||| | |||||||||||||| ||||||||||| || |||| | || |
|
|
| T |
2856697 |
acctctcactttcaaaattgaaacacaatattgacttttgttgccaagcttcaaatataatccaatgaagtgcgccattcacacatgttggattcaaaag |
2856598 |
T |
|
| Q |
399 |
actcgaaaaagaaatttgaggatccacttcaacatttctccaggatgttgttccaagtgtgtttatctcaaggatcacacgctcaaacacccactgattg |
498 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||| |||| |||||| || |||| |||||| || | ||||||||||||||| | ||||| |
|
|
| T |
2856597 |
cttcaaaaaagaaatttgaggatccacttcaacatttctccatgatgatgttccgagcgtgtgtatctcgagcactacacgctcaaacaccaaacgattg |
2856498 |
T |
|
| Q |
499 |
gcatgtttaacatgtcttatccacacgcttattaccttatattcattagttttaggttggaatccaaaaccagcttg--accttgcattcttactcgagt |
596 |
Q |
| |
|
| || |||||| | | |||||| | || |||||||||||||||||||| |||||||| |||||||||||||| || ||| | ||| | ||| |
|
|
| T |
2856497 |
tctcgtctaacatatttgttccacattatgatcaccttatattcattagttttgggttggaaaccaaaaccagcttgtacccgagcactgttaaaccagt |
2856398 |
T |
|
| Q |
597 |
tcg-atttgtagtagattcaggaagtcttatgaactcccccgtgactgggttgcagatcactaatgggtttccaaaagatgggtcagacaaacaaagtaa |
695 |
Q |
| |
|
| | | |||||| |||||||||| || | || |||| ||| ||||||||||| |||||||| ||| |||| | ||||| ||||| |||||||| || |
|
|
| T |
2856397 |
cagaagtcgtagtaagttcaggaagtattgtaaattccctcgttactgggttgcaaatcactaaagggcttccgatagatgtttcagataaacaaagcaa |
2856298 |
T |
|
| Q |
696 |
accattgcaagaattcacaatatcaaactt |
725 |
Q |
| |
|
|||||||||||||||||||| ||||||| |
|
|
| T |
2856297 |
gccattgcaagaattcacaatgccaaactt |
2856268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 108 - 725
Target Start/End: Complemental strand, 2874507 - 2873878
Alignment:
| Q |
108 |
cgaagtatcgatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattgaaacattagatataaaggtcggatcacaaatg |
207 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| | | | | || ||||||| |
|
|
| T |
2874507 |
cgaagtatcaatgttgtaaacaatagtccatgattctccaatgccatattcattcataacccacattgtaacattctcgagagacgatctatgacaaatg |
2874408 |
T |
|
| Q |
208 |
tatagaaatccctttaattctcccatgctaataggc---ctacaacaaaaaacatt---atgatttccaaacacatgtggaggagaaggaaatgactgca |
301 |
Q |
| |
|
|| ||||||||||| |||||||||| ||||||||| ||| ||| |||| ||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2874407 |
taaagaaatcccttcaattctcccaatctaataggcatgctatggggaaatccattatcatgatttccaaacacatgtggaggagaaggaaacgactgca |
2874308 |
T |
|
| Q |
302 |
acctctcattttcaaagcagaaaaccaatattgacctttgctg---accctcaaatcttatccaatgaagtgcaccattcacacaagtgggatactttag |
398 |
Q |
| |
|
|||||||| ||||||| |||| |||||||||| |||| || | | |||||| | |||||||||||||| ||||||||||| || |||| | || |
|
|
| T |
2874307 |
acctctcactttcaaaattgaaacacaatattgacttttgttgccaagcttcaaatataatccaatgaagtgcgccattcacacatgttggattcaaaag |
2874208 |
T |
|
| Q |
399 |
actcgaaaaagaaatttgaggatccacttcaacatttctccaggatgttgttccaagtgtgtttatctcaaggatcacacgctcaaacacccactgattg |
498 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||| |||| |||||| || |||| |||||| || | ||||||||||||||| | ||||| |
|
|
| T |
2874207 |
cttcaaaaaagaaatttgaggatccacttcaacatttctccatgatggtgttccgagcgtgtgtatctcgagcactacacgctcaaacaccaaacgattg |
2874108 |
T |
|
| Q |
499 |
gcatgtttaacatgtcttatccacacgcttattaccttatattcattagttttaggttggaatccaaaaccagcttg--accttgcattcttactcgagt |
596 |
Q |
| |
|
| || |||||| | | |||| | | || |||||||||||||||||||| |||||||| | |||||||||||| || ||| | ||| | ||| |
|
|
| T |
2874107 |
tctcgtctaacatatttgttccatattatgatcaccttatattcattagttttgggttggaaactaaaaccagcttgtacccgagcactgttaaaccagt |
2874008 |
T |
|
| Q |
597 |
tcg-atttgtagtagattcaggaagtcttatgaactcccccgtgactgggttgcagatcactaatgggtttccaaaagatgggtcagacaaacaaagtaa |
695 |
Q |
| |
|
| | | |||||| |||||||||| || |||| |||| ||| ||||||||||| |||||||| ||| |||| | ||||| ||||| |||||||| || |
|
|
| T |
2874007 |
cagaagtcgtagtaagttcaggaagtattgtgaattccctcgttactgggttgcaaatcactaaagggcttccgatagatgtttcagataaacaaagcaa |
2873908 |
T |
|
| Q |
696 |
accattgcaagaattcacaatatcaaactt |
725 |
Q |
| |
|
|||||||||||||||||||| ||||||| |
|
|
| T |
2873907 |
gccattgcaagaattcacaatgccaaactt |
2873878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 18 - 584
Target Start/End: Original strand, 8636873 - 8637454
Alignment:
| Q |
18 |
atgatatgacaatatggcagcaccttcttcaaagtgttttatcggccagcttaaaccataaccccgtggaacacgat---ccaaaggattgaacgaagta |
114 |
Q |
| |
|
||||||| ||||||||||||| || |||||||||||||||| |||||| | || |||||||| | | | | || | |||||||| ||| | ||||| |
|
|
| T |
8636873 |
atgatataacaatatggcagccccctcttcaaagtgttttaccggccatcatataccataacgctgcgaatcaggtctgcccaaaggactgaccaaagta |
8636972 |
T |
|
| Q |
115 |
tcgatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattgaaacattagatataaaggtcggatcacaaatgtatagaa |
214 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| | | ||| | | ||||||||| || || | |
|
|
| T |
8636973 |
tcgatgttgtaaaccttagtccatgattctccaatgccatattcattcataacccacattgcaacatcacggaaaaaagatgtatcacaaatataaagta |
8637072 |
T |
|
| Q |
215 |
atccctttaattctcccatgctaataggc---ctacaacaaaaaacatta---tgatttccaaacacatgtggaggagaaggaaatgactgcaacctctc |
308 |
Q |
| |
|
||||| |||||||||| |||| |||| | || || ||| ||||| |||||| ||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
8637073 |
atccccttaattctccaatgcgaatacactcgttatgacgaaatccattattttgattttgtaacac---tggaggagaaggaaatgattgcaacctctc |
8637169 |
T |
|
| Q |
309 |
attttcaaagcagaaaaccaatattgacctttgctgaccctcaaatcttatccaatgaagtgcaccattcacacaagtgggata------ctttagactc |
402 |
Q |
| |
|
|||||| || |||||| |||||| ||||||| ||||||| |||||| |||||||||| | ||||||||||||||||||||| | || | | |
|
|
| T |
8637170 |
attttctaaacagaaacacaatatagacctttcttgacccttaaatctgatccaatgaatcgtaccattcacacaagtgggataacgaagccatatattt |
8637269 |
T |
|
| Q |
403 |
ga---aaaagaaatttgaggatccacttcaacatttctccaggatgttgttccaagtgtgtttatctcaaggatcacacgctcaaacacccactgattgg |
499 |
Q |
| |
|
|| || ||||||||| |||||||||||| |||||||||| |||| |||||||||||| | ||||||||||| || ||| ||||||||||| ||||| |
|
|
| T |
8637270 |
gatccaatagaaatttggggatccacttcagcatttctccatgatggtgttccaagtgtatatatctcaaggaccatacgatcaaacacccaacgattgc |
8637369 |
T |
|
| Q |
500 |
catgtttaacatgtcttatccacacgcttattaccttatattcattagttttaggttggaatccaaaaccagcttgaccttgcat |
584 |
Q |
| |
|
| ||||||||| || ||| | ||||| ||||||||||||||||||||||||||||| ||||||||| |||| ||| |||| |
|
|
| T |
8637370 |
ctcgtttaacatcactgccccatattcttatcaccttatattcattagttttaggttggaaaccaaaaccaacttgtcctcgcat |
8637454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 108 - 575
Target Start/End: Complemental strand, 2845070 - 2844594
Alignment:
| Q |
108 |
cgaagtatcgatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattgaaacattagatataaaggtcggatcacaaatg |
207 |
Q |
| |
|
||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| | | | | || ||||||| |
|
|
| T |
2845070 |
cgaagtatcaatgctgtaaacaatagtccatgattctccaatgccatattcattcataacccacattgtaacattctcaagagacgatatatgacaaatg |
2844971 |
T |
|
| Q |
208 |
tatagaaatccctttaattctcccatgctaataggcctacaaca---aaaaacattat---gatttccaaacacatgtggaggagaaggaaatgactgca |
301 |
Q |
| |
|
|| ||||||||||| |||||||||| ||||||||| | | | ||| |||||| ||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2844970 |
taaagaaatcccttcaattctcccaatctaataggcatgctaaggggaaatccattatcatgatttccaaacacatgtggaggagaaggaaacgactgca |
2844871 |
T |
|
| Q |
302 |
acctctcattttcaaagcagaaaaccaatattgacctttgctgaccc---tcaaatcttatccaatgaagtgcaccattcacacaagtgggatactttag |
398 |
Q |
| |
|
|||||||| ||||||| |||| |||||||||| |||| || ||| |||||| | |||||||||||||| ||||||||||| || |||| | || |
|
|
| T |
2844870 |
acctctcactttcaaaattgaaacacaatattgacttttgttgccccgtttcaaatataatccaatgaagtgcgccattcacacatgttggattcaaaag |
2844771 |
T |
|
| Q |
399 |
actcgaaaaagaaatttgaggatccacttcaacatttctccaggatgttgttccaagtgtgtttatctcaaggatcacacgctcaaacacccactgattg |
498 |
Q |
| |
|
|| |||||||||||||||||||||||||||| |||||||| |||| ||||||||| |||| |||||| || | ||||||||||||||| | ||||| |
|
|
| T |
2844770 |
cttcaaaaaagaaatttgaggatccacttcaacctttctccatgatggtgttccaagcgtgtgtatctcgagcactacacgctcaaacaccaaacgattg |
2844671 |
T |
|
| Q |
499 |
gcatgtttaacatgtcttatccacacgcttattaccttatattcattagttttaggttggaatccaaaaccagcttg |
575 |
Q |
| |
|
|| |||||| | | |||||| | || |||||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
2844670 |
tttcgtctaacatatttgttccacattatgatcaccttatattcattagttttgggttggaaaccaaaaccagcttg |
2844594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 18 - 472
Target Start/End: Original strand, 8644218 - 8644687
Alignment:
| Q |
18 |
atgatatgacaatatggcagcaccttcttcaaagtgttttatcggccagcttaaaccataaccccgtggaacacgat---ccaaaggattgaacgaagta |
114 |
Q |
| |
|
||||||| ||||||||||||| || |||||||||| ||||| |||||| | ||||||||||| | | | | || | |||||||| ||| | ||||| |
|
|
| T |
8644218 |
atgatataacaatatggcagccccctcttcaaagttttttaccggccaacataaaccataacgctgcgaatcaggtctgcccaaaggactgatcaaagta |
8644317 |
T |
|
| Q |
115 |
tcgatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattgaaacatta-gatataaaggtcggatcacaaatgtataga |
213 |
Q |
| |
|
|| |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| ||||| | || | || | | ||| |||||||| || |
|
|
| T |
8644318 |
tcaatgttgtaaaccttagtccatgattctccaatgtcatattcattcataacccacattgcaacatcacgaaaagaatat-gtatcgcaaatgtaaagt |
8644416 |
T |
|
| Q |
214 |
aatccctttaattctcccatgctaataggc---ctacaacaaaaaacatta---tgatttccaaacacatgtggaggagaaggaaatgactgcaacctct |
307 |
Q |
| |
|
|||||| ||||||||||||||| |||| || ||| || ||| ||||| |||||| |||||| |||||||||||||||||| |||||||||| |
|
|
| T |
8644417 |
aatccccttaattctcccatgcgaatacgctcgttacgacgaaatccattattttgattttgaaacac---tggaggagaaggaaatgattgcaacctct |
8644513 |
T |
|
| Q |
308 |
cattttcaaagcagaaaaccaatattgacctttgctgaccctcaaatcttatccaatgaagtgcaccattcacacaagtgggatactttagactcga--- |
404 |
Q |
| |
|
|| ||||||| |||||| |||||| ||||||| | | |||||||||| ||||||||||| |||||||| ||| |||||||||| | |||||| | |
|
|
| T |
8644514 |
cactttcaaaacagaaacacaatatagacctttcttcatcctcaaatctgatccaatgaagcgcaccattaacataagtgggataatgaagactcaaacc |
8644613 |
T |
|
| Q |
405 |
------aaaagaaatttgaggatccacttcaacatttctccaggatgttgttccaagtgtgtttatctcaagga |
472 |
Q |
| |
|
|| ||||||||||||||| |||||| |||||||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
8644614 |
tgatccaatagaaatttgaggatctacttcagcatttctccatgatggtgttccaagtgtgtttatctcaagga |
8644687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 274 - 570
Target Start/End: Original strand, 9003734 - 9004028
Alignment:
| Q |
274 |
acatgtggaggagaaggaaatgactgcaacctctcattttcaaagcagaaaaccaatattgacctttgctgaccctcaaatcttatccaatgaagtgcac |
373 |
Q |
| |
|
||||||||||| |||||||| || || |||||||||||||| || |||| |||||||||| ||||| || |||||||| |||||||||||||| | |
|
|
| T |
9003734 |
acatgtggaggggaaggaaaagattggaacctctcattttccaaattgaaacacaatattgacatttgcagaaaatcaaatctgatccaatgaagtgcgc |
9003833 |
T |
|
| Q |
374 |
cattcacacaagtgggatactttagactcgaaaaagaaatttgaggatccacttcaacatttctccaggatgttgttccaagtgtgtttatctcaaggat |
473 |
Q |
| |
|
||||||||||||| ||||| || |||||| ||| ||| | ||||||||||||||||||||||||||| |||| |||||| |||||| |||||||||||| |
|
|
| T |
9003834 |
cattcacacaagtcggataattaagactccaaatagacagttgaggatccacttcaacatttctccatgatggtgttcccagtgtg--tatctcaaggat |
9003931 |
T |
|
| Q |
474 |
cacacgctcaaacacccactgattggcatgtttaacatgtcttatccacacgcttattaccttatattcattagttttaggttggaatccaaaacca |
570 |
Q |
| |
|
| ||||||||||||| | | |||| || | |||||||||| |||| | |||| |||||||| ||||||||||||||||| | ||||||||| |
|
|
| T |
9003932 |
cgcacgctcaaacacaaagttattgtcacctctaacatgtctcgtccatatttttatcaccttataatcattagttttaggttgataaccaaaacca |
9004028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 267 - 725
Target Start/End: Complemental strand, 2904848 - 2904384
Alignment:
| Q |
267 |
tccaaacacatgtggaggagaaggaaatgactgcaacctctcattttcaaagcagaaaaccaatattgacctttgctgaccctc---aaatcttatccaa |
363 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |||| ||||||| ||||||| | |||| |||||||||| |||| ||||| || || | | |||||| |
|
|
| T |
2904848 |
tccaaacatatgtggaggagaaggaaatgattgcatcctctcactttcaaaactgaaacacaatattgacttttgttgaccatcttcaactatgatccaa |
2904749 |
T |
|
| Q |
364 |
tgaagtgcaccattcacacaagtgggatactttagactcgaaaaagaaatttgaggatccacttcaacatttctccaggatgttgttccaagtgtgttta |
463 |
Q |
| |
|
|| | | | ||||||||||| ||||||| | || || ||||||||||||||||||||||||||| ||||||||| ||||||||||| || |||| || |
|
|
| T |
2904748 |
tgtaatccgccattcacacatgtgggattcaaaagcttcaaaaaagaaatttgaggatccacttcaagatttctccatgatgttgttccgagcgtgtgta |
2904649 |
T |
|
| Q |
464 |
tctcaaggatcacacgctcaaacacccactgattggcatgtttaacatgtcttatccacacgcttattaccttatattcattagttttaggttggaatcc |
563 |
Q |
| |
|
||||||| | | |||||| |||||| | | ||||| || |||||||| | |||||| |||| |||||||||||||||||||| |||||||| || |
|
|
| T |
2904648 |
tctcaagcactagacgctcgaacaccaaatcgttggcccgtctaacatgtttattccacattattatcaccttatattcattagttttgggttggaaacc |
2904549 |
T |
|
| Q |
564 |
aaaaccagcttg--accttgcattcttactcgagttcg-atttgtagtagattcaggaagtcttatgaactcccccgtgactgggttgcagatcactaat |
660 |
Q |
| |
|
|||||||||||| || ||| | ||| | ||| | | | |||||| |||||||||| || |||| |||| ||| ||||||||||| ||| |||| |
|
|
| T |
2904548 |
aaaaccagcttgcacccgagcactgttaaaccagtcagaagtcgtagtaagttcaggaagtattgtgaattccctcgttactgggttgcaaatcgctaaa |
2904449 |
T |
|
| Q |
661 |
gggtttccaaaagatgggtcagacaaacaaagtaaaccattgcaagaattcacaatatcaaactt |
725 |
Q |
| |
|
||| |||| ||||| ||||| |||||||| || |||||||||||||||||||| ||||||| |
|
|
| T |
2904448 |
gggcttccggtagatgtttcagataaacaaagcaagccattgcaagaattcacaatgccaaactt |
2904384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 113 - 486
Target Start/End: Original strand, 8677918 - 8678304
Alignment:
| Q |
113 |
tatcgatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattgaaacattagatataaaggt-cggatcacaaatgtata |
211 |
Q |
| |
|
|||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||| | | || | | | ||| |||||||| | |
|
|
| T |
8677918 |
tatcaatgttgtaaaccttagtccatgattctccaatgccatattcattcatatcccacattgcaacatcacgga-aaggatatgtatcgcaaatgtaaa |
8678016 |
T |
|
| Q |
212 |
gaaatccctttaattctcccatgctaataggc---ctacaacaaaa---aacattatgatttccaaacacatgtggaggagaaggaaatgactgcaacct |
305 |
Q |
| |
|
| ||||| |||||| ||||||| |||| || |||||| ||| | |||||||||| ||| || |||||||||||||||||| |||||| | |
|
|
| T |
8678017 |
gtaatcctcttaattttcccatgtgaatacgcttgttacaacgaaatccattattatgattttgaaatac---tggaggagaaggaaatgattgcaactt |
8678113 |
T |
|
| Q |
306 |
ctcattttcaaagcagaaaaccaatattgacctttgctgaccctcaaatcttatccaatgaagtgcaccattcacacaagtgggatactttagactcga- |
404 |
Q |
| |
|
|||| |||| || |||||| |||||| ||| ||| ||||||||||||| ||||||||||| |||||||| | |||||||||||| || ||| | |
|
|
| T |
8678114 |
ctcagtttctaaacagaaacacaatatagacatttcttgaccctcaaatccgatccaatgaagcgcaccattaatacaagtgggataacggagcctcaaa |
8678213 |
T |
|
| Q |
405 |
--------aaaagaaatttgaggatccacttcaacatttctccaggatgttg-ttccaagtgtgtttatctcaaggatcacacgctcaaac |
486 |
Q |
| |
|
|| |||||||||||||||||||||| |||||||||| |||| || |||||| |||||||||||||||||||| ||| |||||| |
|
|
| T |
8678214 |
tctgatccaatagaaatttgaggatccacttcagcatttctccatgatggtgtttccaattgtgtttatctcaaggatcatacgatcaaac |
8678304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 604 - 722
Target Start/End: Complemental strand, 8547588 - 8547470
Alignment:
| Q |
604 |
gtagtagattcaggaagtcttatgaactcccccgtgactgggttgcagatcactaatgggtttccaaaagatgggtcagacaaacaaagtaaaccattgc |
703 |
Q |
| |
|
||||||| |||| ||||||||||||||||||| |||| ||| |||||||||||||| |||||||| || ||| |||||||||||||| || ||| ||| |
|
|
| T |
8547588 |
gtagtagcttcaagaagtcttatgaactcccctgtgattggattgcagatcactaaagggtttccggtagttggttcagacaaacaaagcaagccactgc |
8547489 |
T |
|
| Q |
704 |
aagaattcacaatatcaaa |
722 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
8547488 |
aagaattcacaatatcaaa |
8547470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 110 - 175
Target Start/End: Complemental strand, 2905003 - 2904938
Alignment:
| Q |
110 |
aagtatcgatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattg |
175 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2905003 |
aagtatcaatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattg |
2904938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 110 - 469
Target Start/End: Complemental strand, 8548108 - 8547750
Alignment:
| Q |
110 |
aagtatcgatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattgaaacattagatataaaggtcggatcacaaatgta |
209 |
Q |
| |
|
||||||| |||| |||||||||||||||||| |||||| ||||| |||||||||||||||| ||||| ||| | | || || ||||||||||| |
|
|
| T |
8548108 |
aagtatcaatgtggtaaatcttagtccatgactctcca------tattcgttcataacccacattgtaacataagagagatagttccagtcacaaatgta |
8548015 |
T |
|
| Q |
210 |
tagaaatccctttaattctcccatgctaataggcctaca---acaaaaaac------attatgatttccaaacacatgtggaggagaaggaaatgactgc |
300 |
Q |
| |
|
||| |||||||||||||||||| ||||||| | || | || | ||| |||||||||| |||||||| || ||||||||||||||| || |
|
|
| T |
8548014 |
aagacatccctttaattctcccaagctaatacgtcttctcacaccacgaacttcggtattatgattttcaaacacagatgaaggagaaggaaatgattga |
8547915 |
T |
|
| Q |
301 |
aacctctcattttcaaagcagaaaaccaatattgacctttgctgaccctcaaatcttatccaatgaagtgcaccattcacacaagtgggatactttagac |
400 |
Q |
| |
|
|||||||| ||||||| || ||| |||||| |||| | | ||| ||||| |||||||||||||||| ||||||||||||||||||| | ||| |
|
|
| T |
8547914 |
aacctctctctttcaaaacaaaaacacaatatagaccctcccctttccttaaatcggatccaatgaagtgcacgattcacacaagtgggatacataagat |
8547815 |
T |
|
| Q |
401 |
tcgaaaaagaaatttgaggatccacttcaacatttctccaggatgttgttccaagtgtgtttatctcaa |
469 |
Q |
| |
|
||| ||||||||||||||||||||| ||||||||| | || |||||| ||||||| |||||||| |
|
|
| T |
8547814 |
aagaagaagaaatttgaggatccactt----atttctccatgttggtgttccgagtgtgtgtatctcaa |
8547750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 612 - 725
Target Start/End: Complemental strand, 2844548 - 2844435
Alignment:
| Q |
612 |
ttcaggaagtcttatgaactcccccgtgactgggttgcagatcactaatgggtttccaaaagatgggtcagacaaacaaagtaaaccattgcaagaattc |
711 |
Q |
| |
|
|||||||||| || |||| |||| ||| ||||||||||| |||||||| ||| |||| | ||||| ||||| |||||||| || ||||||||||||||| |
|
|
| T |
2844548 |
ttcaggaagtattgtgaattccctcgttactgggttgcaaatcactaaagggcttccgatagatgtttcagataaacaaagcaagccattgcaagaattc |
2844449 |
T |
|
| Q |
712 |
acaatatcaaactt |
725 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
2844448 |
acaatgccaaactt |
2844435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 349 - 489
Target Start/End: Original strand, 3380803 - 3380943
Alignment:
| Q |
349 |
tcaaatcttatccaatgaagtgcaccattcacacaagtgggatactttagactcgaaaaagaaatttgaggatccacttcaacatttctccaggatgttg |
448 |
Q |
| |
|
|||||| | |||||||||||| | || |||||||| ||||||| | || || ||||||||||||||||||||||||||| ||||||| | ||||||| |
|
|
| T |
3380803 |
tcaaatatgatccaatgaagtccgccgttcacacatgtgggattcaaaagcttcaaaaaagaaatttgaggatccacttcaagatttctctatgatgttg |
3380902 |
T |
|
| Q |
449 |
ttccaagtgtgtttatctcaaggatcacacgctcaaacacc |
489 |
Q |
| |
|
|||| | |||| ||||||||| | |||||||| |||||| |
|
|
| T |
3380903 |
ttccgaacgtgtgtatctcaagcactacacgctcgaacacc |
3380943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #19
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 8677811 - 8677871
Alignment:
| Q |
18 |
atgatatgacaatatggcagcaccttcttcaaagtgttttatcggccagcttaaaccataa |
78 |
Q |
| |
|
||||||| |||||||||||||||| |||||||||||||||| |||||| | |||||||||| |
|
|
| T |
8677811 |
atgatataacaatatggcagcaccctcttcaaagtgttttaccggccaacataaaccataa |
8677871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #20
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 606 - 729
Target Start/End: Original strand, 8644833 - 8644956
Alignment:
| Q |
606 |
agtagattcaggaagtcttatgaactcccccgtgactgggttgcagatcactaatgggtttccaaaagatgggtcagacaaacaaagtaaaccattgcaa |
705 |
Q |
| |
|
||||| || |||||||||||| |||||||| |||||||| ||||| || |||||||| |||| | |||| | | ||||||||| || ||||||||| |
|
|
| T |
8644833 |
agtagctttaggaagtcttataaactccccagtgactggattgcaaattactaatggtcttccttcaaatggatgacgcaaacaaagcaagccattgcaa |
8644932 |
T |
|
| Q |
706 |
gaattcacaatatcaaacttatca |
729 |
Q |
| |
|
|||||||||| | ||||||||||| |
|
|
| T |
8644933 |
gaattcacaacaccaaacttatca |
8644956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 532 - 572
Target Start/End: Original strand, 8644747 - 8644787
Alignment:
| Q |
532 |
accttatattcattagttttaggttggaatccaaaaccagc |
572 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
8644747 |
accttatattcattagttttaggttggaagccaaaagcagc |
8644787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 526 - 565
Target Start/End: Complemental strand, 11354082 - 11354043
Alignment:
| Q |
526 |
cttattaccttatattcattagttttaggttggaatccaa |
565 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
11354082 |
cttatcaccttatattcattagttttaggttggaagccaa |
11354043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 526 - 565
Target Start/End: Original strand, 11373311 - 11373350
Alignment:
| Q |
526 |
cttattaccttatattcattagttttaggttggaatccaa |
565 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
11373311 |
cttatcaccttatattcattagttttaggttggaagccaa |
11373350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 8548191 - 8548146
Alignment:
| Q |
18 |
atgatatgacaatatggcagcaccttcttcaaagtgttttatcggc |
63 |
Q |
| |
|
||||||| |||||| ||||||||| |||||||||||||||| |||| |
|
|
| T |
8548191 |
atgatataacaatacggcagcaccctcttcaaagtgttttaccggc |
8548146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 693; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 693; E-Value: 0
Query Start/End: Original strand, 18 - 738
Target Start/End: Original strand, 9443113 - 9443833
Alignment:
| Q |
18 |
atgatatgacaatatggcagcaccttcttcaaagtgttttatcggccagcttaaaccataaccccgtggaacacgatccaaaggattgaacgaagtatcg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9443113 |
atgatatgacaatatggcagcaccttcttcaaagtgttttatcggccagcttaaaccataaccccgtggaacacgatccaaaggattgaacgaagtatcg |
9443212 |
T |
|
| Q |
118 |
atgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattgaaacattagatataaaggtcggatcacaaatgtatagaaatc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9443213 |
atgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattgaaacattagatataaaggtcggatcacaaatgtatagaaatc |
9443312 |
T |
|
| Q |
218 |
cctttaattctcccatgctaataggcctacaacaaaaaacattatgatttccaaacacatgtggaggagaaggaaatgactgcaacctctcattttcaaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
9443313 |
cctttaattctcccatgctaataggcctactacaataaacattatgatttccaaacacatgtggaggagaaggaaatgactgcaacctctcactttcaaa |
9443412 |
T |
|
| Q |
318 |
gcagaaaaccaatattgacctttgctgaccctcaaatcttatccaatgaagtgcaccattcacacaagtgggatactttagactcgaaaaagaaatttga |
417 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9443413 |
gcagaaaaccaatattgacctttgctcatcctcaaatcttatccaatgaagtgcaccattcacacaagtgggatactttagactcgaaaaagaaatttga |
9443512 |
T |
|
| Q |
418 |
ggatccacttcaacatttctccaggatgttgttccaagtgtgtttatctcaaggatcacacgctcaaacacccactgattggcatgtttaacatgtctta |
517 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
9443513 |
ggatccacttcaacatttctccaggatgttgttccaagtgtgtttatctcaaggatcacacgctcaaacacccactgattggcttgtttaacatgtctta |
9443612 |
T |
|
| Q |
518 |
tccacacgcttattaccttatattcattagttttaggttggaatccaaaaccagcttgaccttgcattcttactcgagttcgatttgtagtagattcagg |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9443613 |
tccacacgcttattaccttatattcattagttttaggttggaatccaaaaccagcttgaccttgcattcttactcgagttcgatttgtagtagattcagg |
9443712 |
T |
|
| Q |
618 |
aagtcttatgaactcccccgtgactgggttgcagatcactaatgggtttccaaaagatgggtcagacaaacaaagtaaaccattgcaagaattcacaata |
717 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9443713 |
aagtcttatgaactcccccgtgactgggttgcagatcactattgggtttccaaaagatgggtcagacaaacaaagtaaaccattgcaagaattcacaata |
9443812 |
T |
|
| Q |
718 |
tcaaacttatcaatatctctg |
738 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
9443813 |
tcaaacttatcaatatctctg |
9443833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 432; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 98 - 738
Target Start/End: Complemental strand, 48361869 - 48361223
Alignment:
| Q |
98 |
aaggattgaacgaagtatcgatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattgaaacattagatataaaggtcgg |
197 |
Q |
| |
|
|||||||||||| ||||| ||||||||||| ||||||| |||||||| |||| ||||||||||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
48361869 |
aaggattgaacgcagtattgatgttgtaaaccttagtctatgattcttcaataccatattcattcataacccacattgaaacatcagatgcaaaggtcga |
48361770 |
T |
|
| Q |
198 |
atcacaaatgtatagaaatccctttaattctcccatgctaataggcctacaacaaaaaac------attatgatttccaaacacatgtggaggagaagga |
291 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| |||| || || || |||||||||||||||||||||||||||||||||| |
|
|
| T |
48361769 |
gtcacaaatgtaaagaaatccctttaattctcccatgctaatatgcctgttaccaagaattccattattatgatttccaaacacatgtggaggagaagga |
48361670 |
T |
|
| Q |
292 |
aatgactgcaacctctcattttcaaagcagaaaaccaatattgacctttgctgaccctcaaatcttatccaatgaagtgcaccattcacacaagtgggat |
391 |
Q |
| |
|
|||||||||| ||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48361669 |
aatgactgcaccctctcactttcaaaacagaaaaacaatattgacctttgctgaccctcaaatcttatccaatgaagtgcaccattcacacaagtgggat |
48361570 |
T |
|
| Q |
392 |
actttagactcgaaaaagaaatttgaggatccacttcaacatttctccaggatgttgttccaagtgtgtttatctcaaggatcacacgctcaaacaccca |
491 |
Q |
| |
|
||| ||||||||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
48361569 |
actcgagactcgaaaaagaaatgtgaggatccacttcaacattcctccaggatggtgttccaagtgtgtttatctcaaggatcacacgctcaaactccca |
48361470 |
T |
|
| Q |
492 |
ctgattggcatgtttaacatgtcttatccacacgcttattaccttatattcattagttttaggttggaatccaaaaccagcttgaccttgcattcttact |
591 |
Q |
| |
|
| ||||||| ||||||||||||| | ||||| | |||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
48361469 |
cgcattggcacgtttaacatgtctcacccacatgtttatcaccttatattcattagttttaggttggaaaccaaaaccagcttgtccttgcattcttacc |
48361370 |
T |
|
| Q |
592 |
cgagttcgatttgtagtagattcaggaagtcttatgaactcccccgtgactgggttgcagatcactaatgggtttccaaaagatgggtcagacaaacaaa |
691 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||| ||||||||||||| |
|
|
| T |
48361369 |
cgagttcgatacgcagtagattcaggaagtcttatgaactcccctgtgactgggttgcagatcactaacgggtttcccaaagatggatcagacaaacaaa |
48361270 |
T |
|
| Q |
692 |
gtaaaccattgcaagaattcacaatatcaaacttatcaatatctctg |
738 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
48361269 |
gtaaaccattgcaagaattcacaatatcaaacttatcaaaatctctg |
48361223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 102 - 718
Target Start/End: Original strand, 35779921 - 35780544
Alignment:
| Q |
102 |
attgaacgaagtatcgatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattgaaacattagatataaaggtcggatca |
201 |
Q |
| |
|
||||| |||||| || |||||||||| ||||||||| |||||| ||||||||| ||||||||||||||||||| ||||| | | ||| || ||| |
|
|
| T |
35779921 |
attgaccgaagtctcaatgttgtaaaccttagtccacgattcttcaatgccatgctcattcataacccacattgtaacatcaacaaaaaaattcaagtca |
35780020 |
T |
|
| Q |
202 |
caaatgtatagaaatccctttaattctcccatgctaataggcctacaacaaaaaacattatgatttccaaacacatgtggaggagaaggaaatgactgca |
301 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||| ||||| | | |||| |||||||||||||||||||||||||||||| ||||| |
|
|
| T |
35780021 |
caaatgtaaagaaatccctttaattctcccatgctaatacgcctatta---------tcatgaattccaaacacatgtggaggagaaggaaatggctgca |
35780111 |
T |
|
| Q |
302 |
acctctcattttcaaagcagaaaaccaatattgacctttgctgaccctcaaatcttatccaatgaagtgcaccattcacacaagtgggatactttagact |
401 |
Q |
| |
|
|||||||| |||||| || ||| ||||||||| |||| || ||||||||| | ||||| ||||| ||||||||||||||||||||||||| || || |
|
|
| T |
35780112 |
acctctcaccttcaaaacaaaaacataatattgacttttgttgcccctcaaatttgatccagtgaagcacaccattcacacaagtgggatacttaaggct |
35780211 |
T |
|
| Q |
402 |
cgaaaaagaaatttgaggatccacttcaacatttctccaggatgttgttccaagtgtgtttatctcaaggatcacacgctcaaacacccactgattggca |
501 |
Q |
| |
|
|||| |||||| ||||||||||||||||| ||||||| |||| || ||||||||||||||| || ||||| ||||| ||||||||||| | ||||||| |
|
|
| T |
35780212 |
tgaaatagaaatacgaggatccacttcaacagttctccatgatggtgctccaagtgtgtttatttcgaggataacacgatcaaacacccaatcattggca |
35780311 |
T |
|
| Q |
502 |
tgtttaacatgtcttatccacacgcttattaccttatattcattagttttaggttggaatccaaaaccagcttgaccttgcattcttactcga---gt-- |
596 |
Q |
| |
|
||| ||||||||||||||| | |||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| || |
|
|
| T |
35780312 |
cgttgaacatgtcttatccatatttttatcaccttatattcattagttttaggttggaaaccaaaaccagcttgtccttgcattcttactcgatccgtat |
35780411 |
T |
|
| Q |
597 |
----tc------gatttgtagtagattcaggaagtcttatgaactcccccgtgactgggttgcagatcactaatggg-tttccaaaagatgggtcagaca |
685 |
Q |
| |
|
|| || | ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||| | | |||| | ||||| |
|
|
| T |
35780412 |
ttaatcttaaaggagtcgtagtagcttcaggaagtcttatgaactcccccgtgactgggttgcaaatcactaaagggtttttcggtatatggattagaca |
35780511 |
T |
|
| Q |
686 |
aacaaagtaaaccattgcaagaattcacaatat |
718 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||| |
|
|
| T |
35780512 |
aacaaagcaaaccattgcaagaattgacaatat |
35780544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 48361949 - 48361902
Alignment:
| Q |
18 |
atgatatgacaatatggcagcaccttcttcaaagtgttttatcggcca |
65 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48361949 |
atgatataacaatatggcagcaccttcttcaaagtgttttatcggcca |
48361902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 96; Significance: 1e-46; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 198 - 552
Target Start/End: Original strand, 5130959 - 5131316
Alignment:
| Q |
198 |
atcacaaatgtatagaaatccctttaattctcccatgctaataggcc---tacaacaaaaaacattatgatttccaaacacatgtggaggagaaggaaat |
294 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||||| ||| || | | | ||||| ||||||||||| ||||||| |||||||||||||| ||| |
|
|
| T |
5130959 |
atcagaaatgtaaagaaatccctttaattctcccatgccgatatgctcggtgccataaaaatcattatgattttcaaacacgtgtggaggagaagggaat |
5131058 |
T |
|
| Q |
295 |
gactgcaacctctcattttcaaagcagaaaaccaatattgacctttgctgaccctcaaatcttatccaatgaagtgcaccattcacacaagtgggatact |
394 |
Q |
| |
|
|| ||||| |||||| ||||||| | |||| ||| | |||||||| | ||| || | ||||||||||||| ||||||||||||| ||| ||| |
|
|
| T |
5131059 |
gattgcaatctctcactttcaaaactgaaacacaacaatgacctttttctaagatcatatatgatccaatgaagtgtgtcattcacacaagtaggacact |
5131158 |
T |
|
| Q |
395 |
ttagactcgaaaaagaaatttgaggatccacttcaacatttctccaggatgttgttccaagtgtgtttatctcaaggatcacacgctcaaacacccactg |
494 |
Q |
| |
|
|| ||||||| |||||| ||| |||||||||||||||||||||| || ||||||||| |||| ||||||||||||||||||||||||| |||| | |
|
|
| T |
5131159 |
caagcctcgaaatagaaatctgaagatccacttcaacatttctccatgacaatgttccaagagtgtgtatctcaaggatcacacgctcaaactcccaacg |
5131258 |
T |
|
| Q |
495 |
attggcatgtttaacatgtcttatccacacgcttattaccttatattcattagtttta |
552 |
Q |
| |
|
| |||| |||||||||| |||| ||| | |||| ||||||||||||||||||||| |
|
|
| T |
5131259 |
aacggcacgtttaacatgccttacccatatttttatcaccttatattcattagtttta |
5131316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 98 - 187
Target Start/End: Complemental strand, 26324287 - 26324198
Alignment:
| Q |
98 |
aaggattgaacgaagtatcgatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattgaaacattagata |
187 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
26324287 |
aaggattgaacgaagcatcgatgttgtaaatcttagtccatgattctccagtgccatattcattcataacccacattgaaacatcagata |
26324198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 429 - 507
Target Start/End: Complemental strand, 26324187 - 26324109
Alignment:
| Q |
429 |
aacatttctccaggatgttgttccaagtgtgtttatctcaaggatcacacgctcaaacacccactgattggcatgttta |
507 |
Q |
| |
|
||||||||||||||| | ||||||||||||||| ||| ||||||||||||||||||| ||||| ||||| ||| ||||| |
|
|
| T |
26324187 |
aacatttctccaggacggtgttccaagtgtgttcatcccaaggatcacacgctcaaaaacccattgattagcacgttta |
26324109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 5130813 - 5130860
Alignment:
| Q |
18 |
atgatatgacaatatggcagcaccttcttcaaagtgttttatcggcca |
65 |
Q |
| |
|
||||||| ||||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
5130813 |
atgatatagcaatatggcagcaccctcttcaaagtgttttaccggcca |
5130860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 67; Significance: 2e-29; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 110 - 240
Target Start/End: Original strand, 16716447 - 16716577
Alignment:
| Q |
110 |
aagtatcgatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattgaaacattagatataaaggtcggatcacaaatgta |
209 |
Q |
| |
|
||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||| | | ||| ||||||| |
|
|
| T |
16716447 |
aagtatcaatgtggtaaaccttagtccatgattctccaatgccatattcattcataacccacattgtaacatattcgaagaagtttgagtcagaaatgta |
16716546 |
T |
|
| Q |
210 |
tagaaatccctttaattctcccatgctaata |
240 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
16716547 |
tagaaatccctttaattctcccatgctaata |
16716577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 283 - 469
Target Start/End: Original strand, 16716647 - 16716833
Alignment:
| Q |
283 |
ggagaaggaaatgactgcaacctctcattttcaaagcagaaaaccaatattgacctttgctgaccctcaaatcttatccaatgaagtgcaccattcacac |
382 |
Q |
| |
|
|||||||||||||| |||||| ||||| ||||||| || ||| |||||| ||| ||| | ||||||||| | | ||||||||||||||||||||||| |
|
|
| T |
16716647 |
ggagaaggaaatgaatgcaacttctcactttcaaaacaaaaacacaatatagacatttcccttccctcaaatgtgaaccaatgaagtgcaccattcacac |
16716746 |
T |
|
| Q |
383 |
aagtgggatactttagactcgaaaaagaaatttgaggatccacttcaacatttctccaggatgttgttccaagtgtgtttatctcaa |
469 |
Q |
| |
|
||||||||| | | |||| ||||| ||||||||||||||||| | | ||||||||| | || |||||| ||||||| |||||||| |
|
|
| T |
16716747 |
aagtgggattcataagacatgaaaatgaaatttgaggatccacattgatatttctccatgttggtgttccgagtgtgtgtatctcaa |
16716833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 603 - 729
Target Start/End: Original strand, 16716982 - 16717108
Alignment:
| Q |
603 |
tgtagtagattcaggaagtcttatgaactcccccgtgactgggttgcagatcactaatgggtttccaaaagatgggtcagacaaacaaagtaaaccattg |
702 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||| ||| ||||||||||||||||| ||||||||| || ||| ||||||||||| || || ||||| |
|
|
| T |
16716982 |
tgtagtagtttcaggaagtcttatgaattcccccatgaatgggttgcagatcactatagggtttccagtagttggttcagacaaacatagcaagccatta |
16717081 |
T |
|
| Q |
703 |
caagaattcacaatatcaaacttatca |
729 |
Q |
| |
|
|| ||||||||||||| |||||||||| |
|
|
| T |
16717082 |
catgaattcacaatattaaacttatca |
16717108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0627 (Bit Score: 64; Significance: 1e-27; HSPs: 3)
Name: scaffold0627
Description:
Target: scaffold0627; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 97 - 240
Target Start/End: Original strand, 4735 - 4878
Alignment:
| Q |
97 |
aaaggattgaacgaagtatcgatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccacattgaaacattagatataaaggtcg |
196 |
Q |
| |
|
||||||||| || |||||| |||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||| || || | | |
|
|
| T |
4735 |
aaaggattgtacaaagtattaatgtggtaaaccttagtccatgattcaccaatgccatattcattcataacccacattgtaacatattttaaggagtttg |
4834 |
T |
|
| Q |
197 |
gatcacaaatgtatagaaatccctttaattctcccatgctaata |
240 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
4835 |
agtcacaaatgtaaagaaatccctttaattctcccatgctaata |
4878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0627; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 283 - 467
Target Start/End: Original strand, 4948 - 5130
Alignment:
| Q |
283 |
ggagaaggaaatgactgcaacctctcattttcaaagcagaaaaccaatattgacctttgctgaccctcaaatcttatccaatgaagtgcaccattcacac |
382 |
Q |
| |
|
||||| |||||||| |||||||||||| | ||||| || ||| ||||| ||| ||| || ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
4948 |
ggagagggaaatgattgcaacctctcactgtcaaaacaaaaacacaata--gacgtttcctttccctcaaatctgatccaatgaagtgcaccattcacac |
5045 |
T |
|
| Q |
383 |
aagtgggatactttagactcgaaaaagaaatttgaggatccacttcaacatttctccaggatgttgttccaagtgtgtttatctc |
467 |
Q |
| |
|
||||||||| | | |||| ||||| ||||||||||||||||| | | ||||||||| | || |||||| ||||||| |||||| |
|
|
| T |
5046 |
aagtgggattcataagacatgaaaatgaaatttgaggatccacattgatatttctccatgttgatgttccgagtgtgtgtatctc |
5130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0627; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 612 - 717
Target Start/End: Original strand, 5293 - 5398
Alignment:
| Q |
612 |
ttcaggaagtcttatgaactcccccgtgactgggttgcagatcactaatgggtttccaaaagatgggtcagacaaacaaagtaaaccattgcaagaattc |
711 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||| || ||| | ||||||||| || || ||||| || |||||| |
|
|
| T |
5293 |
ttcaggaagtcttatgaactcccccatgaatgggttgcagatcactaaagggtttccggtagttggttgagacaaacatagcaagccattacaggaattc |
5392 |
T |
|
| Q |
712 |
acaata |
717 |
Q |
| |
|
|||||| |
|
|
| T |
5393 |
acaata |
5398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University