View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16134_low_2 (Length: 635)
Name: NF16134_low_2
Description: NF16134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16134_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 527; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 18 - 619
Target Start/End: Complemental strand, 48068035 - 48067420
Alignment:
| Q |
18 |
caaactattctgagactgacggagaaaatgtttttgtgcatgactagccacctgggttggtg-------------aaaatctcaagatatacctctccag |
104 |
Q |
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| T |
48068035 |
caaactattctgagactgacggagaaaatgtttttgtgcatgactagccacctgggttggtgtttttgttgttacaaaatctctagatatacctctccag |
48067936 |
T |
|
| Q |
105 |
ttacccttcccaagcttctcaagtcctctaagaaatatcatgtgctcctcctcggtccacggcatacctgatcacnnnnnnn-tgtacattatgttaatt |
203 |
Q |
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| T |
48067935 |
ttacccttcccaagcttctcaagtcctctaagaaatatcatgtgctcctcctcggtccacggcatacctgatcacaaaaaaaatgtacattatgttaatt |
48067836 |
T |
|
| Q |
204 |
tcttttccaagcaacaattcacagttctagagtatatcaaatgttaaatcataattagttgaaatttccatgcttaattttctcattagctggagtattc |
303 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
48067835 |
tcttttccaagcaacaattcacagttctagagtatatcaaatgttaaatcataattagttgaaatgtccatgcttaattttctcattagctggagtattc |
48067736 |
T |
|
| Q |
304 |
acttggccggattttgaacatgagacaatagtataattataaccttttttactgggtctaattgttgatgtgtgccagtttcttacgcaactatctgaat |
403 |
Q |
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| T |
48067735 |
acttggccggattttgaacatgagacaatagtataattataaccttttttactgggtctaattgttgatgtgtgccagtttcttacgcaactatctgaat |
48067636 |
T |
|
| Q |
404 |
tttcatttgaaccaaacagggtaggccaggaggaggctattgacaaagaggtccgcgatgatggaaggtagttctttctgatactcctttttgttggcaa |
503 |
Q |
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| T |
48067635 |
tttcatttgaaccaaacagggtaggccaggaggaggctattgacaaagaggtccgcgatgatggcaggtagttctttctgatactcctttttgttggcaa |
48067536 |
T |
|
| Q |
504 |
atatgaaggtgaagaagaataaagatgaaattgctctttgagactgttattgcaagtccttgaattgtgaccaaagtttccacaatatgagcatttccta |
603 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48067535 |
atatgaaggtgaagaagaataaagatgaaattgctctttgagactgttattgcaagtccttgaattgtgaccaaagtttccacaatatgagcatttccta |
48067436 |
T |
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| Q |
604 |
cctattctcatttctt |
619 |
Q |
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| T |
48067435 |
gctattctcatttctt |
48067420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 89 - 156
Target Start/End: Original strand, 45096390 - 45096460
Alignment:
| Q |
89 |
agatatacctctccagttaccc-ttcccaagcttctcaagtcctctaagaa--atatcatgtgctcctcct |
156 |
Q |
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|||||||||||||||||||||| ||||||||| | ||||| |||||| ||| ||||| |||||||||||| |
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| T |
45096390 |
agatatacctctccagttaccctttcccaagcatttcaagccctctatgaattatatcctgtgctcctcct |
45096460 |
T |
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