View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16134_low_3 (Length: 521)

Name: NF16134_low_3
Description: NF16134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16134_low_3
NF16134_low_3
[»] chr2 (3 HSPs)
chr2 (256-504)||(26028664-26028914)
chr2 (131-257)||(26027178-26027305)
chr2 (269-378)||(30200265-30200376)
[»] chr5 (2 HSPs)
chr5 (1-123)||(27343845-27343963)
chr5 (269-504)||(35896582-35896819)
[»] chr7 (1 HSPs)
chr7 (256-493)||(6638861-6639100)
[»] chr8 (1 HSPs)
chr8 (273-414)||(39853920-39854062)
[»] scaffold0002 (1 HSPs)
scaffold0002 (269-504)||(466101-466338)
[»] chr3 (2 HSPs)
chr3 (269-504)||(52055510-52055747)
chr3 (269-378)||(53575120-53575231)
[»] chr1 (2 HSPs)
chr1 (269-504)||(16991407-16991644)
chr1 (269-504)||(31354120-31354357)
[»] chr4 (2 HSPs)
chr4 (268-370)||(20274759-20274863)
chr4 (426-491)||(11189226-11189291)


Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 256 - 504
Target Start/End: Original strand, 26028664 - 26028914
Alignment:
Q  256 gccattgactgatcttgatcagtaaaaacagtttgaggcattttctgtttgtgtgcctttaaaaatgtctcaaa--gccacttgtatgactcttttgttt 353  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  ||||||||||||||||||||||||    
T  26028664 gccattgactgatcttgatcagtaaaaacagtttgaggcattttctgtttgtgtgcctctaaaaatgtctcaaaaagccacttgtatgactcttttgttt 26028763  T
Q  354 catcatataataatgcagccccaaagatcattgttttacaatggtggttaaatcctgaaaacacaactaatagtctatgtgaagtatttgtgcaacatgt 453  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||    
T  26028764 catcatataataatgcagccccaaagatcactgttttacgatggtggttaaatcctgaaaacacagctaatggtctatgtgaagtatttgtgcaatatgt 26028863  T
Q  454 tgaatccagagaaaccacgtcaccgaaatacccataatcaatgagcatcct 504  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  26028864 tgaatcaagagaaaccacgtcaccgaaatacccataatcaatgagcatcct 26028914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 131 - 257
Target Start/End: Original strand, 26027178 - 26027305
Alignment:
Q  131 tagcatcaccttcctgcataa-cattaaagatgtttaatcagtgaacattttttagttcattcacacactccaattgctattagcttaccataaaaggtc 229  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  26027178 tagcatcatcttcctgcataaacattaaagatgtttaatcagtgaacatttttcagtttattcacacactccaattgctattagcttaccataaaaggtc 26027277  T
Q  230 tattgtgtacatcattgagccaaatagc 257  Q
    ||||||||||||||||||||||||||||    
T  26027278 tattgtgtacatcattgagccaaatagc 26027305  T

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Target: chr2; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 269 - 378
Target Start/End: Original strand, 30200265 - 30200376
Alignment:
Q  269 cttgatcagtaaaaacagtttgaggcattttctgtttgtgtgcctttaaaaatgtctcaa--agccacttgtatgactcttttgtttcatcatataataa 366  Q
    |||||||||||||||| ||||||||||||||||| || ||||| | || |||||||||||  ||||||| |||||||||    ||||| |||||||||||    
T  30200265 cttgatcagtaaaaactgtttgaggcattttctgcttatgtgcttctagaaatgtctcaaatagccactcgtatgactcggcagtttcgtcatataataa 30200364  T
Q  367 tgcagccccaaa 378  Q
    |||||| |||||    
T  30200365 tgcagctccaaa 30200376  T

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Target: chr5 (Bit Score: 97; Significance: 2e-47; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 27343845 - 27343963
Alignment:
Q  1 tgtgggctttaaattaagcatcattgcaaagtggattcctttcaactcctttatccaactcggtgctcatcaataataatggggacgtttagtgataaga 100  Q
    |||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||    
T  27343845 tgtgggctttaaattaagcatcatcgcaa-gtggattcctttcaactcctttatccaactcggtgctcatc---aataatggggacgtttagtgataaga 27343940  T
Q  101 gtcatatatgcatctctatcaaa 123  Q
    |||||||||||||||||||||||    
T  27343941 gtcatatatgcatctctatcaaa 27343963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 269 - 504
Target Start/End: Complemental strand, 35896819 - 35896582
Alignment:
Q  269 cttgatcagtaaaaacagtttgaggcattttctgtttgtgtgcctttaaaaatgtctcaa--agccacttgtatgactcttttgtttcatcatataataa 366  Q
    |||||||||||||||| ||||||||||||||||| || ||||| | || |||||||||||  ||||||| |||||||||    ||||| |||||||||||    
T  35896819 cttgatcagtaaaaactgtttgaggcattttctgcttatgtgcttctagaaatgtctcaaatagccactcgtatgactcagcagtttcgtcatataataa 35896720  T
Q  367 tgcagccccaaagatcattgttttacaatggtggttaaatcctgaaaacacaactaatagtctatgtgaagtatttgtgcaacatgttgaatccagagaa 466  Q
    |||||| ||||| || |  | |   | ||||||||||||||| || |  |   ||| | |||| || ||| ||||||||||| |||||||||| ||||||    
T  35896719 tgcagctccaaaaattacggctcctcgatggtggttaaatcccgagatgattgctagtggtctgtgcgaactatttgtgcaatatgttgaatcaagagaa 35896620  T
Q  467 accacgtcaccgaaatacccataatcaatgagcatcct 504  Q
    || || ||||| ||||| |  |||||||  ||||||||    
T  35896619 acaacatcaccaaaataactgtaatcaaccagcatcct 35896582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 256 - 493
Target Start/End: Complemental strand, 6639100 - 6638861
Alignment:
Q  256 gccattgactgatcttgatcagtaaaaacagtttgaggcattttctgtttgtgtgcctttaaaaatgtctcaaag--ccacttgtatgactcttttgttt 353  Q
    |||||||| |||||||||||||||||||| ||||||||||||||||| || || |||| ||||||||||||| ||  ||| ||||| | |||   |||||    
T  6639100 gccattgattgatcttgatcagtaaaaactgtttgaggcattttctgcttatgagcctctaaaaatgtctcagagagccatttgtaagtctcagatgttt 6639001  T
Q  354 catcatataataatgcagccccaaagatcattgttttacaatggtggttaaatcctgaaaacacaactaatagtctatgtgaagtatttgtgcaacatgt 453  Q
    | ||||| || |||||||||||||| |||| || |   | ||||||||||||||| || |||||  | | | ||||||||||| ||||||||||| ||||    
T  6639000 cgtcatacaacaatgcagccccaaaaatcactgctcctcgatggtggttaaatcccgagaacactgcaagtggtctatgtgaattatttgtgcaatatgt 6638901  T
Q  454 tgaatccagagaaaccacgtcaccgaaatacccataatca 493  Q
    |||||| ||||||| ||| ||||| ||| || ||||||||    
T  6638900 tgaatcaagagaaatcacatcaccaaaacactcataatca 6638861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 273 - 414
Target Start/End: Original strand, 39853920 - 39854062
Alignment:
Q  273 atcagtaaaaacagtttgaggcattttctgtttgtgtgcctttaaaaatgtctcaaa--gccacttgtatgactcttttgtttcatcatataataatgca 370  Q
    ||||||||||||  ||||||||||||| ||||| ||||||| ||||| |||||||||  |||||||||| |||||   ||||||||||||||||||||      
T  39853920 atcagtaaaaactatttgaggcattttttgtttatgtgcctctaaaa-tgtctcaaatagccacttgtaagactcaactgtttcatcatataataatgtt 39854018  T
Q  371 gccccaaagatcattgttttacaatggtggttaaatcctgaaaa 414  Q
    |||||||| || |||| ||| ||||| |||||||||||||||||    
T  39854019 gccccaaatatgattgcttttcaatgatggttaaatcctgaaaa 39854062  T

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Target: scaffold0002 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 269 - 504
Target Start/End: Original strand, 466101 - 466338
Alignment:
Q  269 cttgatcagtaaaaacagtttgaggcattttctgtttgtgtgcctttaaaaatgtctcaa--agccacttgtatgactcttttgtttcatcatataataa 366  Q
    |||||||||||||||| ||||||||||||||||| || ||||| | || |||||||||||  ||||||| |||||||||    ||||| |||||||||||    
T  466101 cttgatcagtaaaaactgtttgaggcattttctgcttatgtgcttctagaaatgtctcaaatagccactcgtatgactcagcagtttcgtcatataataa 466200  T
Q  367 tgcagccccaaagatcattgttttacaatggtggttaaatcctgaaaacacaactaatagtctatgtgaagtatttgtgcaacatgttgaatccagagaa 466  Q
    |||||| ||||| || |  | |   | ||||||||||||||| || |  |   ||| | |||| || ||| ||||||||||| |||||||||| ||||||    
T  466201 tgcagctccaaaaattacggctcctcgatggtggttaaatcccgagatgattgctagtggtctgtgcgaactatttgtgcaatatgttgaatcaagagaa 466300  T
Q  467 accacgtcaccgaaatacccataatcaatgagcatcct 504  Q
    || || ||||| ||||| |  |||||||  ||||||||    
T  466301 acaacatcaccaaaataactgtaatcaaccagcatcct 466338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 269 - 504
Target Start/End: Original strand, 52055510 - 52055747
Alignment:
Q  269 cttgatcagtaaaaacagtttgaggcattttctgtttgtgtgcctttaaaaatgtctcaa--agccacttgtatgactcttttgtttcatcatataataa 366  Q
    |||||||||||||||| ||||||||||||||||| || ||||| | || |||||||||||  ||||||| |||||||||    ||||| |||||||||||    
T  52055510 cttgatcagtaaaaactgtttgaggcattttctgcttatgtgcttctagaaatgtctcaaatagccactcgtatgactcagcagtttcgtcatataataa 52055609  T
Q  367 tgcagccccaaagatcattgttttacaatggtggttaaatcctgaaaacacaactaatagtctatgtgaagtatttgtgcaacatgttgaatccagagaa 466  Q
    |||||| ||||| || |  | |   | ||||||||||||||| || |  |   ||| | |||| || ||| ||||||||||| |||||||||| ||||||    
T  52055610 tgcagctccaaaaattacggctcctcgatggtggttaaatcccgagatgattgctagtggtctgtgcgaactatttgtgcaatatgttgaatcaagagaa 52055709  T
Q  467 accacgtcaccgaaatacccataatcaatgagcatcct 504  Q
    || || ||||| ||||| |  |||||||  ||||||||    
T  52055710 acaacatcaccaaaataactgtaatcaaccagcatcct 52055747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 269 - 378
Target Start/End: Original strand, 53575120 - 53575231
Alignment:
Q  269 cttgatcagtaaaaacagtttgaggcattttctgtttgtgtgcctttaaaaatgtctcaa--agccacttgtatgactcttttgtttcatcatataataa 366  Q
    |||||||||||||||| ||||||||||||||||| || ||||| | || |||||||||||  ||||||| |||||||||    ||||| |||||||||||    
T  53575120 cttgatcagtaaaaactgtttgaggcattttctgcttatgtgcttctagaaatgtctcaaatagccactcgtatgactcggcagtttcgtcatataataa 53575219  T
Q  367 tgcagccccaaa 378  Q
    |||||| |||||    
T  53575220 tgcagctccaaa 53575231  T

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Target: chr1 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 269 - 504
Target Start/End: Complemental strand, 16991644 - 16991407
Alignment:
Q  269 cttgatcagtaaaaacagtttgaggcattttctgtttgtgtgcctttaaaaatgtctcaa--agccacttgtatgactcttttgtttcatcatataataa 366  Q
    |||||||||||||||| ||||||||||||||||| || ||||| | || |||||||||||  ||||||| |||||||||    ||||| |||||||||||    
T  16991644 cttgatcagtaaaaactgtttgaggcattttctgcttatgtgcttctagaaatgtctcaaagagccactcgtatgactcagcagtttcgtcatataataa 16991545  T
Q  367 tgcagccccaaagatcattgttttacaatggtggttaaatcctgaaaacacaactaatagtctatgtgaagtatttgtgcaacatgttgaatccagagaa 466  Q
    |||||| ||||| || |  | |   | ||||||||||||||| || |  |   ||| | |||| || ||| ||||||||||| |||||||||| ||||||    
T  16991544 tgcagctccaaaaattacggctcctcgatggtggttaaatcccgagatgattgctagtggtctgtgcgaactatttgtgcaatatgttgaatcaagagaa 16991445  T
Q  467 accacgtcaccgaaatacccataatcaatgagcatcct 504  Q
    || || ||||| ||||| |  |||||||  ||||||||    
T  16991444 acaacatcaccaaaataactgtaatcaaccagcatcct 16991407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 269 - 504
Target Start/End: Complemental strand, 31354357 - 31354120
Alignment:
Q  269 cttgatcagtaaaaacagtttgaggcattttctgtttgtgtgcctttaaaaatgtctcaa--agccacttgtatgactcttttgtttcatcatataataa 366  Q
    |||||||||||||||| ||||||||||||||||| || ||||| | || |||||||||||  ||||||| |||||||||    ||||| |||||||||||    
T  31354357 cttgatcagtaaaaactgtttgaggcattttctgcttatgtgcttctagaaatgtctcaaatagccactcgtatgactcagcagtttcgtcatataataa 31354258  T
Q  367 tgcagccccaaagatcattgttttacaatggtggttaaatcctgaaaacacaactaatagtctatgtgaagtatttgtgcaacatgttgaatccagagaa 466  Q
    |||||| ||||| || |  | |   | ||||||||||||||| || |  |   ||| | |||| || ||| ||||||||||| |||||||||| ||||||    
T  31354257 tgcagctccaaaaattacggctcctcgatggtggttaaatcccgagatgattgctagtggtctgtgcgaactatttgtgcaatatgttgaatcaagagaa 31354158  T
Q  467 accacgtcaccgaaatacccataatcaatgagcatcct 504  Q
    || || ||||| ||||| |  |||||||  ||||||||    
T  31354157 acaacatcaccaaaataactgtaatcaaccagcatcct 31354120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 268 - 370
Target Start/End: Complemental strand, 20274863 - 20274759
Alignment:
Q  268 tcttgatcagtaaaaacagtttgaggcattttctgtttgtgtgcctttaaaaatgtctcaa--agccacttgtatgactcttttgtttcatcatataata 365  Q
    |||||||||||| |||  ||||||||||||||||| || ||||| | || |||||||||||  |||||||  ||||||||    ||||| ||||||||||    
T  20274863 tcttgatcagtataaaatgtttgaggcattttctgcttatgtgcttctagaaatgtctcaaagagccactcatatgactcagcagtttcgtcatataata 20274764  T
Q  366 atgca 370  Q
    |||||    
T  20274763 atgca 20274759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 426 - 491
Target Start/End: Complemental strand, 11189291 - 11189226
Alignment:
Q  426 gtctatgtgaagtatttgtgcaacatgttgaatccagagaaaccacgtcaccgaaatacccataat 491  Q
    ||||||||||| |||| |||||| |||||||||| ||||| ||||| ||||| || |||| |||||    
T  11189291 gtctatgtgaactattagtgcaatatgttgaatcaagagagaccacatcaccaaagtacctataat 11189226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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