View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16134_low_4 (Length: 498)

Name: NF16134_low_4
Description: NF16134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16134_low_4
NF16134_low_4
[»] chr4 (7 HSPs)
chr4 (158-482)||(42927399-42927723)
chr4 (9-163)||(42927205-42927359)
chr4 (164-288)||(44728399-44728523)
chr4 (7-79)||(44728197-44728269)
chr4 (335-393)||(44728705-44728763)
chr4 (31-78)||(47842649-47842696)
chr4 (361-393)||(47842115-47842147)
[»] chr6 (3 HSPs)
chr6 (336-392)||(21111362-21111418)
chr6 (14-77)||(21354325-21354388)
chr6 (238-285)||(21305704-21305751)
[»] scaffold1787 (1 HSPs)
scaffold1787 (236-285)||(1279-1328)


Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 158 - 482
Target Start/End: Original strand, 42927399 - 42927723
Alignment:
Q  158 gaaaactttaatttcaccagaaattttccaaggagttctactgcagtggtggatctacacgctttattcgcaattgcagcaataaaaggacgaaccttaa 257  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42927399 gaaaactttaatttcaccagaaattttccaaggagttctactgcagtggtggatctacacgctttattcgcaattgcagcaataaaaggacgaaccttaa 42927498  T
Q  258 tgtccaaagtgtgcatcagaaatgggaaattttaaataggaaggaaaaccatcctcccaaccccttcttgggtacctttccacacagaaacacggcatgg 357  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42927499 tgtccaaagtgtgcatcagaaatggtaaattttaaataggaaggaaaaccatcctcccaaccccttcttgggtacctttccacacagaaacacggcatgg 42927598  T
Q  358 tgatgtgccaatgtcaattccaattgctatttcaggttctgtcatcctacatttacaagccaagattgttgagagttttctaagtaacatcaactagtta 457  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||    
T  42927599 tgatgtgccaatgtcaattccaattgctatttcaggttctgtcatcctacatttacaaaccaagattgttaagagttttctaagtaacatcaactaatta 42927698  T
Q  458 gttagcattactttgtttgaaaaat 482  Q
    |||||||||||||||||||||||||    
T  42927699 gttagcattactttgtttgaaaaat 42927723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 9 - 163
Target Start/End: Original strand, 42927205 - 42927359
Alignment:
Q  9 gagatgaagcagaagtctgcagttgttgttgtgcataaaacaaagccactgctattggttgaggcatcagttcgacatcatcaagatcagcccacgcaga 108  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  42927205 gagaagaagcagaagtctgcagttgttgttgtgcataaaacaaagccactgctattggttgaggcatcagttcaacatcatcaagatcagcccacgcaga 42927304  T
Q  109 agcgcgttctatctgggttcgctgcaatcgagtgaatgaaactggaacagaaaac 163  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  42927305 agcgcgttctatctgggttcgccgcaatcgagtgaatgaaactggaacagtaaac 42927359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 164 - 288
Target Start/End: Original strand, 44728399 - 44728523
Alignment:
Q  164 tttaatttcaccagaaattttccaaggagttctactgcagtggtggatctacacgctttattcgcaattgcagcaataaaaggacgaaccttaatgtcca 263  Q
    ||||| ||||||||||| |||||||||||||||||||||||||| ||| | ||| |||| ||| ||| |||||| | ||||||||||| |||||||||||    
T  44728399 tttaaattcaccagaaagtttccaaggagttctactgcagtggttgatttgcacactttgttcacaaatgcagctacaaaaggacgaatcttaatgtcca 44728498  T
Q  264 aagtgtgcatcagaaatgggaaatt 288  Q
    |||||||||||||||||||||||||    
T  44728499 aagtgtgcatcagaaatgggaaatt 44728523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 7 - 79
Target Start/End: Original strand, 44728197 - 44728269
Alignment:
Q  7 gtgagatgaagcagaagtctgcagttgttgttgtgcataaaacaaagccactgctattggttgaggcatcagt 79  Q
    |||||| ||||||||||  ||||||||||| |||||||||| ||||||||||||| |||||| ||||||||||    
T  44728197 gtgagaagaagcagaagcatgcagttgttgatgtgcataaagcaaagccactgctgttggttcaggcatcagt 44728269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 335 - 393
Target Start/End: Original strand, 44728705 - 44728763
Alignment:
Q  335 ttccacacagaaacacggcatggtgatgtgccaatgtcaattccaattgctatttcagg 393  Q
    |||||||||||||||| |||||||||| |||||||||||||||||| || |||||||||    
T  44728705 ttccacacagaaacacagcatggtgatctgccaatgtcaattccaagtgttatttcagg 44728763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 31 - 78
Target Start/End: Complemental strand, 47842696 - 47842649
Alignment:
Q  31 ttgttgttgtgcataaaacaaagccactgctattggttgaggcatcag 78  Q
    |||||| |||||||| ||||||||||||||| ||||||||||||||||    
T  47842696 ttgttgctgtgcatacaacaaagccactgctgttggttgaggcatcag 47842649  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 361 - 393
Target Start/End: Complemental strand, 47842147 - 47842115
Alignment:
Q  361 tgtgccaatgtcaattccaattgctatttcagg 393  Q
    ||||||||| |||||||||||||||||||||||    
T  47842147 tgtgccaatatcaattccaattgctatttcagg 47842115  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 336 - 392
Target Start/End: Original strand, 21111362 - 21111418
Alignment:
Q  336 tccacacagaaacacggcatggtgatgtgccaatgtcaattccaattgctatttcag 392  Q
    ||||||| |||||||  |||| |||||||||||||||||||||||||||||||||||    
T  21111362 tccacacggaaacacaacatgttgatgtgccaatgtcaattccaattgctatttcag 21111418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 14 - 77
Target Start/End: Original strand, 21354325 - 21354388
Alignment:
Q  14 gaagcagaagtctgcagttgttgttgtgcataaaacaaagccactgctattggttgaggcatca 77  Q
    ||||||||||  |||||||||||||||||||| |||| |||||||||| || ||||||| ||||    
T  21354325 gaagcagaagcatgcagttgttgttgtgcatacaacagagccactgctgttagttgaggaatca 21354388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 238 - 285
Target Start/End: Original strand, 21305704 - 21305751
Alignment:
Q  238 aataaaaggacgaaccttaatgtccaaagtgtgcatcagaaatgggaa 285  Q
    |||||||||  ||||||||||||| || ||||||||||||||||||||    
T  21305704 aataaaagggtgaaccttaatgtctaaggtgtgcatcagaaatgggaa 21305751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1787 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold1787
Description:

Target: scaffold1787; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 236 - 285
Target Start/End: Complemental strand, 1328 - 1279
Alignment:
Q  236 gcaataaaaggacgaaccttaatgtccaaagtgtgcatcagaaatgggaa 285  Q
    |||||||||||  ||||||||||||||||  |||||||||||||||||||    
T  1328 gcaataaaagggtgaaccttaatgtccaagctgtgcatcagaaatgggaa 1279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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