View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16134_low_8 (Length: 233)

Name: NF16134_low_8
Description: NF16134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16134_low_8
NF16134_low_8
[»] chr7 (8 HSPs)
chr7 (15-217)||(48638215-48638423)
chr7 (21-65)||(31136386-31136430)
chr7 (20-65)||(48070861-48070906)
chr7 (25-65)||(12470124-12470164)
chr7 (21-65)||(2923135-2923179)
chr7 (21-65)||(12470904-12470948)
chr7 (21-65)||(46993495-46993539)
chr7 (21-65)||(49124463-49124507)
[»] chr4 (4 HSPs)
chr4 (21-65)||(8606029-8606073)
chr4 (21-65)||(23107802-23107846)
chr4 (21-65)||(24466210-24466254)
chr4 (19-65)||(13207282-13207328)
[»] chr3 (4 HSPs)
chr3 (21-65)||(23659633-23659677)
chr3 (21-65)||(26757842-26757886)
chr3 (21-65)||(44681893-44681937)
chr3 (21-65)||(46892833-46892877)
[»] chr2 (7 HSPs)
chr2 (21-65)||(5526463-5526507)
chr2 (21-65)||(29109057-29109101)
chr2 (18-94)||(33221561-33221638)
chr2 (21-65)||(30340616-30340660)
chr2 (22-65)||(30906736-30906779)
chr2 (21-86)||(28199803-28199869)
chr2 (21-65)||(37630575-37630619)
[»] chr6 (6 HSPs)
chr6 (18-65)||(11971657-11971704)
chr6 (21-63)||(9826986-9827028)
chr6 (18-65)||(11846487-11846534)
chr6 (23-65)||(23300664-23300706)
chr6 (21-54)||(5416283-5416316)
chr6 (21-49)||(26186601-26186629)
[»] scaffold0879 (1 HSPs)
scaffold0879 (21-65)||(475-519)
[»] scaffold0590 (1 HSPs)
scaffold0590 (21-65)||(8414-8457)
[»] chr8 (1 HSPs)
chr8 (21-63)||(32322049-32322091)
[»] scaffold0564 (1 HSPs)
scaffold0564 (21-50)||(6564-6593)
[»] chr5 (1 HSPs)
chr5 (24-65)||(17770459-17770500)
[»] scaffold0565 (1 HSPs)
scaffold0565 (21-65)||(1742-1786)


Alignment Details
Target: chr7 (Bit Score: 135; Significance: 2e-70; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 15 - 217
Target Start/End: Original strand, 48638215 - 48638423
Alignment:
Q  15 gaaggaagaaagtgaatgaattaaagagtattttatgttggactataatttagtcataatcatatgtgtgtgcgcgcgcgcttcaatt------------ 102  Q
    |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||      ||||||||||||                
T  48638215 gaaggaagaaagtgaatgaattaaagagtattttatgttgaactttaatttagtcataatcatatgtgtg------cgcgcttcaatttgataatcgaat 48638308  T
Q  103 caaactagatagtttttgttagttcagttcaacttttttatgtgtcacgaaaacaaacgtgccataattatgcatcttgaatgcatgcatgagctgctta 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  48638309 caaactagatagtttttgttagttcagttcaacttttttatgtgtcacaaaaacaaacatgccataattatgcatcttgaatgcatgcatgagctgctta 48638408  T
Q  203 aatggcccttgatca 217  Q
    |||||||||||||||    
T  48638409 aatggcccttgatca 48638423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 31136430 - 31136386
Alignment:
Q  21 agaaagtgaatgaattaaagagtattttatgttggactataattt 65  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||    
T  31136430 agaaagtgaatgaattaaggagtattttatgttggactttaattt 31136386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 48070906 - 48070861
Alignment:
Q  20 aagaaagtgaatgaattaaagagtattttatgttggactataattt 65  Q
    |||||||||||||||||||  |||||||||||||||||| ||||||    
T  48070906 aagaaagtgaatgaattaagaagtattttatgttggactttaattt 48070861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 12470124 - 12470164
Alignment:
Q  25 agtgaatgaattaaagagtattttatgttggactataattt 65  Q
    ||||||||||| |||||||||||||||||||||| ||||||    
T  12470124 agtgaatgaatcaaagagtattttatgttggactttaattt 12470164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 2923179 - 2923135
Alignment:
Q  21 agaaagtgaatgaattaaagagtattttatgttggactataattt 65  Q
    ||||||||||||||||||  ||| |||||||||||||| ||||||    
T  2923179 agaaagtgaatgaattaagtagttttttatgttggactttaattt 2923135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 12470904 - 12470948
Alignment:
Q  21 agaaagtgaatgaattaaagagtattttatgttggactataattt 65  Q
    ||||||||||||||| || |||||||||||| |||||| ||||||    
T  12470904 agaaagtgaatgaatcaaggagtattttatggtggactttaattt 12470948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 46993539 - 46993495
Alignment:
Q  21 agaaagtgaatgaattaaagagtattttatgttggactataattt 65  Q
    ||||| |||||| |||||| |||||||||||||||||| ||||||    
T  46993539 agaaattgaatggattaaaaagtattttatgttggactttaattt 46993495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 49124507 - 49124463
Alignment:
Q  21 agaaagtgaatgaattaaagagtattttatgttggactataattt 65  Q
    |||||||||||||| ||| ||||| ||||||||||||| ||||||    
T  49124507 agaaagtgaatgaactaaggagtaatttatgttggactttaattt 49124463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 8606029 - 8606073
Alignment:
Q  21 agaaagtgaatgaattaaagagtattttatgttggactataattt 65  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||    
T  8606029 agaaagtgaatgaattaaggagtattttatgttggactttaattt 8606073  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 23107802 - 23107846
Alignment:
Q  21 agaaagtgaatgaattaaagagtattttatgttggactataattt 65  Q
    |||||||||||| |||||| |||||||||||||||||| ||||||    
T  23107802 agaaagtgaatggattaaaaagtattttatgttggactttaattt 23107846  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 24466210 - 24466254
Alignment:
Q  21 agaaagtgaatgaattaaagagtattttatgttggactataattt 65  Q
    |||||||||||| |||||| |||||||||||||||||| ||||||    
T  24466210 agaaagtgaatggattaaaaagtattttatgttggactttaattt 24466254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 13207282 - 13207328
Alignment:
Q  19 gaagaaagtgaatgaattaaagagtattttatgttggactataattt 65  Q
    |||||||||||||| ||||| |||||||||||||||| || ||||||    
T  13207282 gaagaaagtgaatggattaatgagtattttatgttgggctttaattt 13207328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 23659677 - 23659633
Alignment:
Q  21 agaaagtgaatgaattaaagagtattttatgttggactataattt 65  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||    
T  23659677 agaaagtgaatgaattaaggagtattttatgttggactttaattt 23659633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 26757886 - 26757842
Alignment:
Q  21 agaaagtgaatgaattaaagagtattttatgttggactataattt 65  Q
    |||||||||||||||||| ||||||||||||||| ||| ||||||    
T  26757886 agaaagtgaatgaattaaggagtattttatgttgaactttaattt 26757842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 44681893 - 44681937
Alignment:
Q  21 agaaagtgaatgaattaaagagtattttatgttggactataattt 65  Q
    ||||||| |||||||||| ||||||||||||||||||| ||||||    
T  44681893 agaaagtaaatgaattaaggagtattttatgttggactttaattt 44681937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 46892877 - 46892833
Alignment:
Q  21 agaaagtgaatgaattaaagagtattttatgttggactataattt 65  Q
    |||||||||||||||||| ||||||||||||||| ||| ||||||    
T  46892877 agaaagtgaatgaattaaggagtattttatgttgaactttaattt 46892833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 5526507 - 5526463
Alignment:
Q  21 agaaagtgaatgaattaaagagtattttatgttggactataattt 65  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||    
T  5526507 agaaagtgaatgaattaaggagtattttatgttggactttaattt 5526463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 29109057 - 29109101
Alignment:
Q  21 agaaagtgaatgaattaaagagtattttatgttggactataattt 65  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||    
T  29109057 agaaagtgaatgaattaaggagtattttatgttggactttaattt 29109101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 33221561 - 33221638
Alignment:
Q  18 ggaagaaagtgaatgaattaaagagtattttatgttggactataat-ttagtcataatcatatgtgtgtgcgcgcgcg 94  Q
    |||||||| | |||| ||||||  ||||||||||||||||| |||| |||| |||||||||| ||||||| |||||||    
T  33221561 ggaagaaaataaatgtattaaaatgtattttatgttggactttaatgttaggcataatcataagtgtgtgtgcgcgcg 33221638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 30340660 - 30340616
Alignment:
Q  21 agaaagtgaatgaattaaagagtattttatgttggactataattt 65  Q
    ||||||||||||||| |||||||||||||||||| ||| ||||||    
T  30340660 agaaagtgaatgaataaaagagtattttatgttgaactttaattt 30340616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 65
Target Start/End: Original strand, 30906736 - 30906779
Alignment:
Q  22 gaaagtgaatgaattaaagagtattttatgttggactataattt 65  Q
    ||||||||||||||||| ||||||||||||||| ||| ||||||    
T  30906736 gaaagtgaatgaattaaggagtattttatgttgaactttaattt 30906779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 86
Target Start/End: Complemental strand, 28199869 - 28199803
Alignment:
Q  21 agaaagtgaatgaattaaagagtattttatgttggactataa-tttagtcataatcatatgtgtgtg 86  Q
    |||||||||||| ||||| ||||||| ||||||||||| ||| ||||| | |||||||| |||||||    
T  28199869 agaaagtgaatggattaaggagtattatatgttggactttaattttaggcctaatcataagtgtgtg 28199803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 37630619 - 37630575
Alignment:
Q  21 agaaagtgaatgaattaaagagtattttatgttggactataattt 65  Q
    ||||||||||||||||||  ||||||| |||||||||| ||||||    
T  37630619 agaaagtgaatgaattaagaagtatttgatgttggactttaattt 37630575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 11971704 - 11971657
Alignment:
Q  18 ggaagaaagtgaatgaattaaagagtattttatgttggactataattt 65  Q
    ||||||||||| ||||||||| ||||||||||||||||||| ||||||    
T  11971704 ggaagaaagtggatgaattaaggagtattttatgttggactttaattt 11971657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 21 - 63
Target Start/End: Complemental strand, 9827028 - 9826986
Alignment:
Q  21 agaaagtgaatgaattaaagagtattttatgttggactataat 63  Q
    |||||||||||||||||| ||||||||||||||||||| ||||    
T  9827028 agaaagtgaatgaattaaggagtattttatgttggactttaat 9826986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 11846534 - 11846487
Alignment:
Q  18 ggaagaaagtgaatgaattaaagagtattttatgttggactataattt 65  Q
    ||||||||||| ||||||||| ||||||| ||||||||||| ||||||    
T  11846534 ggaagaaagtggatgaattaaggagtattgtatgttggactttaattt 11846487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 65
Target Start/End: Complemental strand, 23300706 - 23300664
Alignment:
Q  23 aaagtgaatgaattaaagagtattttatgttggactataattt 65  Q
    |||||||| ||||||| ||||||||||||||||||| ||||||    
T  23300706 aaagtgaaagaattaaggagtattttatgttggactttaattt 23300664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 5416316 - 5416283
Alignment:
Q  21 agaaagtgaatgaattaaagagtattttatgttg 54  Q
    ||||||||||||||||||||| ||||||||||||    
T  5416316 agaaagtgaatgaattaaagactattttatgttg 5416283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 49
Target Start/End: Original strand, 26186601 - 26186629
Alignment:
Q  21 agaaagtgaatgaattaaagagtatttta 49  Q
    |||||||||||||||||||||||||||||    
T  26186601 agaaagtgaatgaattaaagagtatttta 26186629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0879 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0879
Description:

Target: scaffold0879; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 475 - 519
Alignment:
Q  21 agaaagtgaatgaattaaagagtattttatgttggactataattt 65  Q
    |||||||||||| |||||| |||||||||||||||||| ||||||    
T  475 agaaagtgaatggattaaaaagtattttatgttggactttaattt 519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 8457 - 8414
Alignment:
Q  21 agaaagtgaatgaattaaagagtattttatgttggactataattt 65  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||    
T  8457 agaaagtgaatgaattaaagagta-tttatgttggactttaattt 8414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 63
Target Start/End: Complemental strand, 32322091 - 32322049
Alignment:
Q  21 agaaagtgaatgaattaaagagtattttatgttggactataat 63  Q
    ||||||| |||||||||| ||||||||||||||||||| ||||    
T  32322091 agaaagtaaatgaattaaggagtattttatgttggactttaat 32322049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0564 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 50
Target Start/End: Complemental strand, 6593 - 6564
Alignment:
Q  21 agaaagtgaatgaattaaagagtattttat 50  Q
    ||||||||||||||||||||||||||||||    
T  6593 agaaagtgaatgaattaaagagtattttat 6564  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 65
Target Start/End: Complemental strand, 17770500 - 17770459
Alignment:
Q  24 aagtgaatgaattaaagagtattttatgttggactataattt 65  Q
    ||||||||||||||| |||||||||||||||| || ||||||    
T  17770500 aagtgaatgaattaaggagtattttatgttgggctttaattt 17770459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0565 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 1742 - 1786
Alignment:
Q  21 agaaagtgaatgaattaaagagtattttatgttggactataattt 65  Q
    |||||||||||| |||||| |||||||||||||||| | ||||||    
T  1742 agaaagtgaatggattaaaaagtattttatgttggattttaattt 1786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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