View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16135_high_11 (Length: 294)

Name: NF16135_high_11
Description: NF16135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16135_high_11
NF16135_high_11
[»] chr4 (12 HSPs)
chr4 (63-277)||(31473634-31473848)
chr4 (168-277)||(37229994-37230103)
chr4 (229-277)||(46147613-46147661)
chr4 (169-277)||(24968912-24969021)
chr4 (218-277)||(36463660-36463718)
chr4 (138-184)||(8653084-8653130)
chr4 (138-184)||(8664891-8664937)
chr4 (240-277)||(12739808-12739845)
chr4 (240-277)||(12748014-12748051)
chr4 (232-277)||(26175894-26175939)
chr4 (236-277)||(37782155-37782196)
chr4 (232-277)||(56178894-56178939)
[»] chr2 (4 HSPs)
chr2 (174-273)||(11049344-11049443)
chr2 (232-277)||(38312105-38312150)
chr2 (232-277)||(36988333-36988378)
chr2 (233-277)||(2334675-2334719)
[»] chr5 (7 HSPs)
chr5 (201-277)||(16451915-16451991)
chr5 (169-277)||(42926694-42926803)
chr5 (240-277)||(533642-533679)
chr5 (232-277)||(28750913-28750958)
chr5 (232-277)||(32636689-32636734)
chr5 (232-277)||(39468807-39468852)
chr5 (217-277)||(5007401-5007461)
[»] chr3 (6 HSPs)
chr3 (169-277)||(53921761-53921870)
chr3 (138-184)||(30235589-30235635)
chr3 (232-277)||(32744684-32744729)
chr3 (218-277)||(32890954-32891013)
chr3 (218-277)||(44700750-44700808)
chr3 (240-277)||(29196659-29196696)
[»] chr1 (14 HSPs)
chr1 (176-276)||(23555524-23555625)
chr1 (221-277)||(13138232-13138288)
chr1 (182-277)||(16455462-16455556)
chr1 (218-277)||(50167446-50167505)
chr1 (218-277)||(50169468-50169527)
chr1 (223-277)||(31659094-31659148)
chr1 (172-277)||(15820112-15820217)
chr1 (240-277)||(40122456-40122493)
chr1 (232-277)||(46064783-46064828)
chr1 (232-277)||(49918214-49918259)
chr1 (221-277)||(197166-197222)
chr1 (229-277)||(777092-777140)
chr1 (233-277)||(28220484-28220528)
chr1 (233-277)||(28223679-28223723)
[»] chr8 (8 HSPs)
chr8 (169-277)||(10929602-10929711)
chr8 (169-277)||(3303928-3304037)
chr8 (174-277)||(4162304-4162410)
chr8 (168-277)||(28307853-28307962)
chr8 (240-277)||(29796581-29796618)
chr8 (232-277)||(30143207-30143252)
chr8 (232-277)||(42498059-42498104)
chr8 (217-277)||(3318808-3318868)
[»] chr7 (15 HSPs)
chr7 (138-185)||(11241257-11241304)
chr7 (218-277)||(12098130-12098189)
chr7 (222-277)||(31105651-31105706)
chr7 (218-277)||(36146680-36146739)
chr7 (177-277)||(23565318-23565419)
chr7 (218-277)||(41317705-41317764)
chr7 (235-277)||(4253788-4253830)
chr7 (223-277)||(30024990-30025044)
chr7 (232-277)||(2761560-2761605)
chr7 (232-277)||(6570459-6570504)
chr7 (232-277)||(19502043-19502088)
chr7 (240-277)||(36574774-36574811)
chr7 (232-276)||(23554905-23554949)
chr7 (174-277)||(48489237-48489341)
chr7 (174-277)||(48491385-48491489)
[»] scaffold0016 (1 HSPs)
scaffold0016 (233-277)||(114456-114500)
[»] chr6 (3 HSPs)
chr6 (235-277)||(4045283-4045325)
chr6 (232-277)||(9183289-9183334)
chr6 (232-277)||(26954543-26954588)


Alignment Details
Target: chr4 (Bit Score: 183; Significance: 5e-99; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 63 - 277
Target Start/End: Original strand, 31473634 - 31473848
Alignment:
Q  63 aattagcacaggtgttgtgaaattctggatttggattcactagataaatattttattagcaagctgttgtattgcgactcaaaattgagtctttgggttt 162  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31473634 aattagcaccggtgttgtgaaattctggatttggattcactagataaatattttattagcaagctgttgtattgcgactcaaaattgagtctttgggttt 31473733  T
Q  163 gtgaagaatcatgacacgattttgacagtagtagggtactatataagtattttagttcatttttgagtaagagctttaagagagaaaaatttgagaaatc 262  Q
    |||||||||| ||||||||||||||||||||   || ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||    
T  31473734 gtgaagaatcctgacacgattttgacagtagcgaggcactatataagtattttagttcatttttgagtaagagcttcaagagataaaaatttgagaaatc 31473833  T
Q  263 aaaggaggtaacttt 277  Q
    |||||||||||||||    
T  31473834 aaaggaggtaacttt 31473848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 168 - 277
Target Start/End: Complemental strand, 37230103 - 37229994
Alignment:
Q  168 gaatcatgacacgattttgacagtagtagggtactatataagtattttagttcatttttgagtaagagctttaagagagaaaaatttgagaaatcaaagg 267  Q
    ||||| |||||||||||||||||||  | |  ||||||||||  ||| |||| |||||||||||||||||| |||||||| ||| |||||||||||||||    
T  37230103 gaatcgtgacacgattttgacagtatcaagacactatataagcgtttcagtttatttttgagtaagagcttcaagagagacaaacttgagaaatcaaagg 37230004  T
Q  268 aggtaacttt 277  Q
    ||||||||||    
T  37230003 aggtaacttt 37229994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 229 - 277
Target Start/End: Complemental strand, 46147661 - 46147613
Alignment:
Q  229 gtaagagctttaagagagaaaaatttgagaaatcaaaggaggtaacttt 277  Q
    |||||||||| |||||||||||| ||| |||||||||||||||||||||    
T  46147661 gtaagagcttcaagagagaaaaacttgggaaatcaaaggaggtaacttt 46147613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 169 - 277
Target Start/End: Original strand, 24968912 - 24969021
Alignment:
Q  169 aatcatgacacgattttgacagtagtagggtactatataagtattttagttca--tttttgagtaagagctttaagagagaaaaatttgagaaatcaaag 266  Q
    |||| ||||||||| |||||||| || ||||||||| ||||| |||  |||||  ||||| | | ||| ||| |||||||||||| ||| ||||||||||    
T  24968912 aatcgtgacacgatattgacagttgttgggtactatttaagtgtttctgttcagatttttta-tgagaacttcaagagagaaaaacttgggaaatcaaag 24969010  T
Q  267 gaggtaacttt 277  Q
    |||||||||||    
T  24969011 gaggtaacttt 24969021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 218 - 277
Target Start/End: Complemental strand, 36463718 - 36463660
Alignment:
Q  218 ttcatttttgagtaagagctttaagagagaaaaatttgagaaatcaaaggaggtaacttt 277  Q
    |||||||||||||| |||||| |||||||||||| ||| ||||||| |||||||||||||    
T  36463718 ttcatttttgagta-gagcttcaagagagaaaaacttgggaaatcataggaggtaacttt 36463660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 184
Target Start/End: Original strand, 8653084 - 8653130
Alignment:
Q  138 gactcaaaattgagtctttgggtttgtgaagaatcatgacacgattt 184  Q
    ||||||||||||||||||| ||||||||||||||| ||||| |||||    
T  8653084 gactcaaaattgagtcttttggtttgtgaagaatcgtgacatgattt 8653130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 184
Target Start/End: Original strand, 8664891 - 8664937
Alignment:
Q  138 gactcaaaattgagtctttgggtttgtgaagaatcatgacacgattt 184  Q
    ||||||||||||||||||| ||||||||||||||| ||||| |||||    
T  8664891 gactcaaaattgagtcttttggtttgtgaagaatcgtgacatgattt 8664937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 277
Target Start/End: Complemental strand, 12739845 - 12739808
Alignment:
Q  240 aagagagaaaaatttgagaaatcaaaggaggtaacttt 277  Q
    |||||||| ||| |||||||||||||||||||||||||    
T  12739845 aagagagagaaacttgagaaatcaaaggaggtaacttt 12739808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 277
Target Start/End: Complemental strand, 12748051 - 12748014
Alignment:
Q  240 aagagagaaaaatttgagaaatcaaaggaggtaacttt 277  Q
    |||||||| ||| |||||||||||||||||||||||||    
T  12748051 aagagagagaaacttgagaaatcaaaggaggtaacttt 12748014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 277
Target Start/End: Complemental strand, 26175939 - 26175894
Alignment:
Q  232 agagctttaagagagaaaaatttgagaaatcaaaggaggtaacttt 277  Q
    ||||||| |||||||| ||| ||| |||||||||||||||||||||    
T  26175939 agagcttgaagagagagaaacttgggaaatcaaaggaggtaacttt 26175894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 277
Target Start/End: Complemental strand, 37782196 - 37782155
Alignment:
Q  236 ctttaagagagaaaaatttgagaaatcaaaggaggtaacttt 277  Q
    |||||||| ||||||||||| ||||||||| |||||||||||    
T  37782196 ctttaagaaagaaaaatttgggaaatcaaatgaggtaacttt 37782155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 277
Target Start/End: Complemental strand, 56178939 - 56178894
Alignment:
Q  232 agagctttaagagagaaaaatttgagaaatcaaaggaggtaacttt 277  Q
    ||||||| |||||||| ||| ||| |||||||||||||||||||||    
T  56178939 agagcttgaagagagagaaacttgggaaatcaaaggaggtaacttt 56178894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 174 - 273
Target Start/End: Original strand, 11049344 - 11049443
Alignment:
Q  174 tgacacgattttgacagtagtagggtactatataagtattttagttcatttttgagtaagagctttaagagagaaaaatttgagaaatcaaaggaggtaa 273  Q
    ||||||||||||||||||| ||||| ||||||||||  ||| ||||||||||||||  ||||||| |||||||| ||| ||| |||||||||||||||||    
T  11049344 tgacacgattttgacagtattagggcactatataagcgtttcagttcatttttgagatagagcttcaagagagagaaacttgggaaatcaaaggaggtaa 11049443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 232 - 277
Target Start/End: Original strand, 38312105 - 38312150
Alignment:
Q  232 agagctttaagagagaaaaatttgagaaatcaaaggaggtaacttt 277  Q
    ||||||| |||||||| ||||||| |||||||||||||||||||||    
T  38312105 agagcttgaagagagagaaatttgggaaatcaaaggaggtaacttt 38312150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 277
Target Start/End: Complemental strand, 36988378 - 36988333
Alignment:
Q  232 agagctttaagagagaaaaatttgagaaatcaaaggaggtaacttt 277  Q
    ||||||| |||||||| ||| ||| |||||||||||||||||||||    
T  36988378 agagcttgaagagagagaaacttgggaaatcaaaggaggtaacttt 36988333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 277
Target Start/End: Complemental strand, 2334719 - 2334675
Alignment:
Q  233 gagctttaagagagaaaaatttgagaaatcaaaggaggtaacttt 277  Q
    |||||| |||||||| ||| ||| |||||||||||||||||||||    
T  2334719 gagcttgaagagagagaaacttgggaaatcaaaggaggtaacttt 2334675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 5e-19; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 201 - 277
Target Start/End: Original strand, 16451915 - 16451991
Alignment:
Q  201 ctatataagtattttagttcatttttgagtaagagctttaagagagaaaaatttgagaaatcaaaggaggtaacttt 277  Q
    ||||||||| |||| |||||||||||||| |||||||| ||||||| |||| ||| |||||||||||||||||||||    
T  16451915 ctatataagcatttcagttcatttttgaggaagagcttcaagagaggaaaacttgggaaatcaaaggaggtaacttt 16451991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 169 - 277
Target Start/End: Original strand, 42926694 - 42926803
Alignment:
Q  169 aatcatgacacgattttgacagtagtagggtactatataagtattttagttcat-ttttgagtaagagctttaagagagaaaaatttgagaaatcaaagg 267  Q
    |||| |||||||||||||||| | | || ||||||| ||||| |||  |||||  |||||  | ||||||| |||||||||||| ||| ||||||||| |    
T  42926694 aatcgtgacacgattttgacacttgcagagtactatttaagtgtttctgttcagattttggatgagagcttcaagagagaaaaacttgggaaatcaaatg 42926793  T
Q  268 aggtaacttt 277  Q
    ||||||||||    
T  42926794 aggtaacttt 42926803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 277
Target Start/End: Original strand, 533642 - 533679
Alignment:
Q  240 aagagagaaaaatttgagaaatcaaaggaggtaacttt 277  Q
    |||||||| ||||||| |||||||||||||||||||||    
T  533642 aagagagagaaatttgggaaatcaaaggaggtaacttt 533679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 277
Target Start/End: Complemental strand, 28750958 - 28750913
Alignment:
Q  232 agagctttaagagagaaaaatttgagaaatcaaaggaggtaacttt 277  Q
    ||||||| |||||||| ||| ||| |||||||||||||||||||||    
T  28750958 agagcttgaagagagagaaacttgggaaatcaaaggaggtaacttt 28750913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 277
Target Start/End: Original strand, 32636689 - 32636734
Alignment:
Q  232 agagctttaagagagaaaaatttgagaaatcaaaggaggtaacttt 277  Q
    |||||||  ||||||| ||| |||||||||||||||||||||||||    
T  32636689 agagcttggagagagagaaacttgagaaatcaaaggaggtaacttt 32636734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 277
Target Start/End: Complemental strand, 39468852 - 39468807
Alignment:
Q  232 agagctttaagagagaaaaatttgagaaatcaaaggaggtaacttt 277  Q
    ||||||| |||||||| ||| ||| |||||||||||||||||||||    
T  39468852 agagcttgaagagagagaaacttgggaaatcaaaggaggtaacttt 39468807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 277
Target Start/End: Original strand, 5007401 - 5007461
Alignment:
Q  217 gttcatttttgagtaagagctttaagagagaaaaatttgagaaatcaaaggaggtaacttt 277  Q
    |||||||||| ||  || ||||||||||||||||| ||   ||||||||||||||||||||    
T  5007401 gttcatttttaaggtagggctttaagagagaaaaacttagaaaatcaaaggaggtaacttt 5007461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 169 - 277
Target Start/End: Complemental strand, 53921870 - 53921761
Alignment:
Q  169 aatcatgacacgattttgacagtagtagggtactatataagtattttagttcatttttg-agtaagagctttaagagagaaaaatttgagaaatcaaagg 267  Q
    |||| |||||||||||||||||   ||| ||| ||| ||||| |||||||||||||||  ||| ||||||| |||||||||||| ||| ||||||||| |    
T  53921870 aatcgtgacacgattttgacagctatagagtattatttaagtgttttagttcatttttttagtgagagcttgaagagagaaaaacttgggaaatcaaatg 53921771  T
Q  268 aggtaacttt 277  Q
    ||||||||||    
T  53921770 aggtaacttt 53921761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 138 - 184
Target Start/End: Original strand, 30235589 - 30235635
Alignment:
Q  138 gactcaaaattgagtctttgggtttgtgaagaatcatgacacgattt 184  Q
    ||||||||||||||||||| ||||||||||||||| |||||||||||    
T  30235589 gactcaaaattgagtcttttggtttgtgaagaatcgtgacacgattt 30235635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 232 - 277
Target Start/End: Complemental strand, 32744729 - 32744684
Alignment:
Q  232 agagctttaagagagaaaaatttgagaaatcaaaggaggtaacttt 277  Q
    ||||||| |||||||||||| ||| |||||||||||||||||||||    
T  32744729 agagcttcaagagagaaaaacttgggaaatcaaaggaggtaacttt 32744684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 218 - 277
Target Start/End: Original strand, 32890954 - 32891013
Alignment:
Q  218 ttcatttttgagtaagagctttaagagagaaaaatttgagaaatcaaaggaggtaacttt 277  Q
    ||||||||| || |||||||| ||||||| ||||||||  || |||||||||||||||||    
T  32890954 ttcattttttagaaagagcttcaagagaggaaaatttggaaagtcaaaggaggtaacttt 32891013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 218 - 277
Target Start/End: Complemental strand, 44700808 - 44700750
Alignment:
Q  218 ttcatttttgagtaagagctttaagagagaaaaatttgagaaatcaaaggaggtaacttt 277  Q
    |||||||||||| |||||||| |||||||| ||| | | |||||||||||||||||||||    
T  44700808 ttcatttttgag-aagagcttcaagagagagaaactagggaaatcaaaggaggtaacttt 44700750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 277
Target Start/End: Complemental strand, 29196696 - 29196659
Alignment:
Q  240 aagagagaaaaatttgagaaatcaaaggaggtaacttt 277  Q
    |||||||||||| ||| |||||||||||||||||||||    
T  29196696 aagagagaaaaacttgggaaatcaaaggaggtaacttt 29196659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 176 - 276
Target Start/End: Complemental strand, 23555625 - 23555524
Alignment:
Q  176 acacgattttgacagtagtagggtactatataagtattttagttcattttt-gagtaagagctttaagagagaaaaatttgagaaatcaaaggaggtaac 274  Q
    |||| ||||||||||||  |||  ||||| ||||| ||||||||||||||| |||  ||||||| |||||||||||| ||| ||||||||||||||||||    
T  23555625 acacaattttgacagtatcaggtcactatttaagtgttttagttcattttttgagagagagcttcaagagagaaaaacttgggaaatcaaaggaggtaac 23555526  T
Q  275 tt 276  Q
    ||    
T  23555525 tt 23555524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 221 - 277
Target Start/End: Complemental strand, 13138288 - 13138232
Alignment:
Q  221 atttttgagtaagagctttaagagagaaaaatttgagaaatcaaaggaggtaacttt 277  Q
    ||||||||| |||||||| |||||||||||| ||| |||||||||||||||||||||    
T  13138288 atttttgaggaagagcttcaagagagaaaaacttgggaaatcaaaggaggtaacttt 13138232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 277
Target Start/End: Original strand, 16455462 - 16455556
Alignment:
Q  182 ttttgacagtagtagggtactatataagtattttagttcatttttgagtaagagctttaagagag-aaaaatttgagaaatcaaaggaggtaacttt 277  Q
    ||||||||||||||||| ||||  ||||| ||| ||||||||||||||  ||| ||| |||| || ||||| |||||||||||||||||||| ||||    
T  16455462 ttttgacagtagtagggcactacttaagtgtttcagttcatttttgag--agatcttcaagaaagaaaaaaattgagaaatcaaaggaggtatcttt 16455556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 218 - 277
Target Start/End: Complemental strand, 50167505 - 50167446
Alignment:
Q  218 ttcatttttgagtaagagctttaagagagaaaaatttgagaaatcaaaggaggtaacttt 277  Q
    |||||||||  |||||||||| |||||||| ||| | | |||||||||||||||||||||    
T  50167505 ttcattttttggtaagagcttcaagagagagaaactagggaaatcaaaggaggtaacttt 50167446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 218 - 277
Target Start/End: Complemental strand, 50169527 - 50169468
Alignment:
Q  218 ttcatttttgagtaagagctttaagagagaaaaatttgagaaatcaaaggaggtaacttt 277  Q
    |||||||||  |||||||||| |||||||| ||| | | |||||||||||||||||||||    
T  50169527 ttcattttttggtaagagcttcaagagagagaaactagggaaatcaaaggaggtaacttt 50169468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 277
Target Start/End: Original strand, 31659094 - 31659148
Alignment:
Q  223 ttttgagtaagagctttaagagagaaaaatttgagaaatcaaaggaggtaacttt 277  Q
    |||||||  ||||||| |||||||| ||| ||| |||||||||||||||||||||    
T  31659094 ttttgagagagagcttgaagagagagaaacttgggaaatcaaaggaggtaacttt 31659148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 277
Target Start/End: Original strand, 15820112 - 15820217
Alignment:
Q  172 catgacacgattttgacagtagtagggtactatataagtattttagttcatttttgagtaagagctttaagagagaaaaatttgagaaatcaaaggaggt 271  Q
    ||||||||||||| ||||  |  || ||||||| ||| | ||| || | |||||||||  || |||| |||||||||||| ||| ||||||||| |||||    
T  15820112 catgacacgatttagacaacaacagagtactatttaattgtttcagcttatttttgagagagggcttcaagagagaaaaacttgggaaatcaaaagaggt 15820211  T
Q  272 aacttt 277  Q
    ||||||    
T  15820212 aacttt 15820217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 277
Target Start/End: Complemental strand, 40122493 - 40122456
Alignment:
Q  240 aagagagaaaaatttgagaaatcaaaggaggtaacttt 277  Q
    |||||||||||| ||| |||||||||||||||||||||    
T  40122493 aagagagaaaaacttgggaaatcaaaggaggtaacttt 40122456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 277
Target Start/End: Original strand, 46064783 - 46064828
Alignment:
Q  232 agagctttaagagagaaaaatttgagaaatcaaaggaggtaacttt 277  Q
    ||||||| |||||||||||| ||| |||||||||| ||||||||||    
T  46064783 agagcttcaagagagaaaaacttgggaaatcaaagaaggtaacttt 46064828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 277
Target Start/End: Original strand, 49918214 - 49918259
Alignment:
Q  232 agagctttaagagagaaaaatttgagaaatcaaaggaggtaacttt 277  Q
    ||||||| |||||||| ||| ||| |||||||||||||||||||||    
T  49918214 agagcttgaagagagagaaacttgggaaatcaaaggaggtaacttt 49918259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 277
Target Start/End: Complemental strand, 197222 - 197166
Alignment:
Q  221 atttttgagtaagagctttaagagagaaaaatttgagaaatcaaaggaggtaacttt 277  Q
    |||||||||| ||| ||| ||||||| |||| |||  ||||||||||||||||||||    
T  197222 atttttgagtgagaacttcaagagaggaaaacttggaaaatcaaaggaggtaacttt 197166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 277
Target Start/End: Original strand, 777092 - 777140
Alignment:
Q  229 gtaagagctttaagagagaaaaatttgagaaatcaaaggaggtaacttt 277  Q
    |||||||||| |||||||| ||| | | |||||||||||||||||||||    
T  777092 gtaagagcttcaagagagagaaactagggaaatcaaaggaggtaacttt 777140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 277
Target Start/End: Complemental strand, 28220528 - 28220484
Alignment:
Q  233 gagctttaagagagaaaaatttgagaaatcaaaggaggtaacttt 277  Q
    |||||| |||||||| ||| ||| |||||||||||||||||||||    
T  28220528 gagcttgaagagagagaaacttgggaaatcaaaggaggtaacttt 28220484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 277
Target Start/End: Complemental strand, 28223723 - 28223679
Alignment:
Q  233 gagctttaagagagaaaaatttgagaaatcaaaggaggtaacttt 277  Q
    |||||| |||||||| ||| ||| |||||||||||||||||||||    
T  28223723 gagcttgaagagagagaaacttgggaaatcaaaggaggtaacttt 28223679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 169 - 277
Target Start/End: Original strand, 10929602 - 10929711
Alignment:
Q  169 aatcatgacacgattttgacagtagtagggtactatataagtattttagttcattttt-gagtaagagctttaagagagaaaaatttgagaaatcaaagg 267  Q
    |||| |||||||||||||||||||  ||   ||||| ||||| ||| ||||||||||| ||  |||||||| ||||||| |||| ||| |||||||||||    
T  10929602 aatcgtgacacgattttgacagtatcagatcactatttaagtgtttcagttcattttttgacaaagagcttcaagagaggaaaacttgggaaatcaaagg 10929701  T
Q  268 aggtaacttt 277  Q
    ||||||||||    
T  10929702 aggtaacttt 10929711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 169 - 277
Target Start/End: Complemental strand, 3304037 - 3303928
Alignment:
Q  169 aatcatgacacgattttgacagtagtagggtactatataagtattttagttcattttt-gagtaagagctttaagagagaaaaatttgagaaatcaaagg 267  Q
    |||| ||||||||||||||||||| || |  ||||| ||||| ||| | ||||||||| |||   ||| || |||||||||||| ||| |||||||||||    
T  3304037 aatcgtgacacgattttgacagtattaagtcactatttaagtgtttcaattcattttttgagggggaggttcaagagagaaaaacttgggaaatcaaagg 3303938  T
Q  268 aggtaacttt 277  Q
    ||||||||||    
T  3303937 aggtaacttt 3303928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 174 - 277
Target Start/End: Original strand, 4162304 - 4162410
Alignment:
Q  174 tgacacgattttgacagtagtagggtactatataagtattttagttcatttt-tgagtaagagctttaagag--agaaaaatttgagaaatcaaaggagg 270  Q
    |||||||||||||||||||  | |||||||| ||||  | | |||||||||| ||||||||||||| |||||  | ||||| || |||||| ||| ||||    
T  4162304 tgacacgattttgacagtatcatggtactatttaagcgtatcagttcattttttgagtaagagcttcaagagaaaaaaaaacttaagaaattaaaagagg 4162403  T
Q  271 taacttt 277  Q
    |||||||    
T  4162404 taacttt 4162410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 277
Target Start/End: Complemental strand, 28307962 - 28307853
Alignment:
Q  168 gaatcatgacacgattttgacagtagtagggtactatataagtattttagttcatttttgagtaagagctttaagagagaaaaatttgagaaatcaaagg 267  Q
    ||||| |||||||||||||||  |   ||| |||||| ||||  ||||||||||||||||| | ||||||| |||||||| ||| ||  ||   ||||||    
T  28307962 gaatcgtgacacgattttgactcttacaggatactatttaagggttttagttcatttttgaatgagagcttgaagagagagaaacttaggattacaaagg 28307863  T
Q  268 aggtaacttt 277  Q
    ||||||||||    
T  28307862 aggtaacttt 28307853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 277
Target Start/End: Complemental strand, 29796618 - 29796581
Alignment:
Q  240 aagagagaaaaatttgagaaatcaaaggaggtaacttt 277  Q
    |||||||| ||| |||||||||||||||||||||||||    
T  29796618 aagagagagaaacttgagaaatcaaaggaggtaacttt 29796581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 277
Target Start/End: Original strand, 30143207 - 30143252
Alignment:
Q  232 agagctttaagagagaaaaatttgagaaatcaaaggaggtaacttt 277  Q
    ||||||| |||||||| ||| ||| |||||||||||||||||||||    
T  30143207 agagcttgaagagagagaaacttgggaaatcaaaggaggtaacttt 30143252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 277
Target Start/End: Original strand, 42498059 - 42498104
Alignment:
Q  232 agagctttaagagagaaaaatttgagaaatcaaaggaggtaacttt 277  Q
    ||||||| |||||||| ||| ||| |||||||||||||||||||||    
T  42498059 agagcttgaagagagagaaacttgggaaatcaaaggaggtaacttt 42498104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 277
Target Start/End: Complemental strand, 3318868 - 3318808
Alignment:
Q  217 gttcatttttgagtaagagctttaagagagaaaaatttgagaaatcaaaggaggtaacttt 277  Q
    |||||||||||||  ||||||| || ||||| ||| ||||||| ||||| |||||||||||    
T  3318868 gttcatttttgaggcagagcttcaaaagagagaaagttgagaattcaaatgaggtaacttt 3318808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 138 - 185
Target Start/End: Complemental strand, 11241304 - 11241257
Alignment:
Q  138 gactcaaaattgagtctttgggtttgtgaagaatcatgacacgatttt 185  Q
    |||||||||||||||||||| |||| ||||||||| ||||||||||||    
T  11241304 gactcaaaattgagtctttgagtttatgaagaatcgtgacacgatttt 11241257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 218 - 277
Target Start/End: Complemental strand, 12098189 - 12098130
Alignment:
Q  218 ttcatttttgagtaagagctttaagagagaaaaatttgagaaatcaaaggaggtaacttt 277  Q
    |||||||||  | |||||||| |||||||||||| ||| |||||||||||||||||||||    
T  12098189 ttcattttttgggaagagcttcaagagagaaaaacttgggaaatcaaaggaggtaacttt 12098130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 222 - 277
Target Start/End: Complemental strand, 31105706 - 31105651
Alignment:
Q  222 tttttgagtaagagctttaagagagaaaaatttgagaaatcaaaggaggtaacttt 277  Q
    ||||| || |||||||| ||||||| |||| |||||||||||||||||||||||||    
T  31105706 tttttaaggaagagcttcaagagaggaaaacttgagaaatcaaaggaggtaacttt 31105651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 218 - 277
Target Start/End: Complemental strand, 36146739 - 36146680
Alignment:
Q  218 ttcatttttgagtaagagctttaagagagaaaaatttgagaaatcaaaggaggtaacttt 277  Q
    |||||||||  | |||||||| |||||||||||| ||| |||||||||||||||||||||    
T  36146739 ttcattttttgggaagagcttcaagagagaaaaacttgggaaatcaaaggaggtaacttt 36146680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 277
Target Start/End: Complemental strand, 23565419 - 23565318
Alignment:
Q  177 cacgattttgacagtagtagggtactatataagtattttagttcatttttgagtaa-gagctttaagagagaaaaatttgagaaatcaaaggaggtaact 275  Q
    ||||||||||||||||  | || ||||| |||  |||| | |||||||||||| || |||||| |||||||| ||| ||| || ||||||||||||||||    
T  23565419 cacgattttgacagtatcaaggcactatttaaacatttcaattcatttttgagaaaagagcttcaagagagagaaacttgggatatcaaaggaggtaact 23565320  T
Q  276 tt 277  Q
    ||    
T  23565319 tt 23565318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 218 - 277
Target Start/End: Complemental strand, 41317764 - 41317705
Alignment:
Q  218 ttcatttttgagtaagagctttaagagagaaaaatttgagaaatcaaaggaggtaacttt 277  Q
    |||||||||  |||||||||| |||||||| ||| | | |||||||||||||||||||||    
T  41317764 ttcattttttggtaagagcttcaagagagagaaactagggaaatcaaaggaggtaacttt 41317705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 277
Target Start/End: Complemental strand, 4253830 - 4253788
Alignment:
Q  235 gctttaagagagaaaaatttgagaaatcaaaggaggtaacttt 277  Q
    ||||||||||||| ||| ||| |||||||||||||||||||||    
T  4253830 gctttaagagagagaaacttgggaaatcaaaggaggtaacttt 4253788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 277
Target Start/End: Complemental strand, 30025044 - 30024990
Alignment:
Q  223 ttttgagtaagagctttaagagagaaaaatttgagaaatcaaaggaggtaacttt 277  Q
    |||||| | ||||||| |||||||| ||| ||| |||||||||||||||||||||    
T  30025044 ttttgaatgagagcttgaagagagagaaacttgggaaatcaaaggaggtaacttt 30024990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 277
Target Start/End: Complemental strand, 2761605 - 2761560
Alignment:
Q  232 agagctttaagagagaaaaatttgagaaatcaaaggaggtaacttt 277  Q
    ||||||| |||||||| ||| ||| |||||||||||||||||||||    
T  2761605 agagcttgaagagagataaacttgggaaatcaaaggaggtaacttt 2761560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 277
Target Start/End: Original strand, 6570459 - 6570504
Alignment:
Q  232 agagctttaagagagaaaaatttgagaaatcaaaggaggtaacttt 277  Q
    ||||||| ||||| | |||| |||||||||||||||||||||||||    
T  6570459 agagcttaaagaggggaaaacttgagaaatcaaaggaggtaacttt 6570504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 277
Target Start/End: Original strand, 19502043 - 19502088
Alignment:
Q  232 agagctttaagagagaaaaatttgagaaatcaaaggaggtaacttt 277  Q
    ||||||| |||||||| ||| ||||||||||||| |||||||||||    
T  19502043 agagcttaaagagagacaaacttgagaaatcaaatgaggtaacttt 19502088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 277
Target Start/End: Complemental strand, 36574811 - 36574774
Alignment:
Q  240 aagagagaaaaatttgagaaatcaaaggaggtaacttt 277  Q
    |||||||| ||| |||||||||||||||||||||||||    
T  36574811 aagagagagaaaattgagaaatcaaaggaggtaacttt 36574774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 276
Target Start/End: Original strand, 23554905 - 23554949
Alignment:
Q  232 agagctttaagagagaaaaatttgagaaatcaaaggaggtaactt 276  Q
    ||||||| |||||||| ||| ||| ||||||||||||||||||||    
T  23554905 agagcttgaagagagagaaacttgggaaatcaaaggaggtaactt 23554949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 277
Target Start/End: Original strand, 48489237 - 48489341
Alignment:
Q  174 tgacacgattttgacagtagtagggtactatataagtattttagttcat-ttttgagtaagagctttaagagagaaaaatttgagaaatcaaaggaggta 272  Q
    ||||| |||||||||||| | |||||||||| ||||| || | || ||  ||||||  ||||| || |||| ||| ||| ||| ||||||||||||||||    
T  48489237 tgacatgattttgacagttgcagggtactatttaagtgttcttgtgcagattttgaagaagagattgaagatagagaaacttgggaaatcaaaggaggta 48489336  T
Q  273 acttt 277  Q
    |||||    
T  48489337 acttt 48489341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 277
Target Start/End: Original strand, 48491385 - 48491489
Alignment:
Q  174 tgacacgattttgacagtagtagggtactatataagtattttagttcat-ttttgagtaagagctttaagagagaaaaatttgagaaatcaaaggaggta 272  Q
    ||||| |||||||| ||| | |||||||||| ||||| || | || ||  ||||||  ||||| || |||||||| ||| |||| |||||||||||||||    
T  48491385 tgacatgattttgatagttgcagggtactatttaagtgttcttgtgcagattttgaagaagaggttgaagagagagaaacttgataaatcaaaggaggta 48491484  T
Q  273 acttt 277  Q
    |||||    
T  48491485 acttt 48491489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 277
Target Start/End: Original strand, 114456 - 114500
Alignment:
Q  233 gagctttaagagagaaaaatttgagaaatcaaaggaggtaacttt 277  Q
    |||||| |||||||| ||| |||||||||||||||||||||||||    
T  114456 gagcttgaagagagagaaacttgagaaatcaaaggaggtaacttt 114500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 277
Target Start/End: Original strand, 4045283 - 4045325
Alignment:
Q  235 gctttaagagagaaaaatttgagaaatcaaaggaggtaacttt 277  Q
    ||||||||||||| ||| |||||||||||| ||||||||||||    
T  4045283 gctttaagagagagaaacttgagaaatcaatggaggtaacttt 4045325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 277
Target Start/End: Complemental strand, 9183334 - 9183289
Alignment:
Q  232 agagctttaagagagaaaaatttgagaaatcaaaggaggtaacttt 277  Q
    ||||||| |||||||| ||| ||| |||||||||||||||||||||    
T  9183334 agagcttgaagagagagaaacttgggaaatcaaaggaggtaacttt 9183289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 277
Target Start/End: Complemental strand, 26954588 - 26954543
Alignment:
Q  232 agagctttaagagagaaaaatttgagaaatcaaaggaggtaacttt 277  Q
    ||||||| ||||||| |||| ||| |||||||||||||||||||||    
T  26954588 agagcttcaagagaggaaaacttgggaaatcaaaggaggtaacttt 26954543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University