View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16135_high_15 (Length: 249)
Name: NF16135_high_15
Description: NF16135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16135_high_15 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 4163328 - 4163189
Alignment:
| Q |
1 |
ttactatagtgattggtaattttggagaacccannnnnnnncttcaatgctgcaaaagtatagagataaaaatgtgatatgtgaataattttttggaatt |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4163328 |
ttactatagtgatcggtaattttggagaacccattttttttcttcaatgctgcaaaagtatagagataaaaatgtgatatgtgaataattttttggaatt |
4163229 |
T |
|
| Q |
101 |
cagtcttttatatgcaagtaaggggaacatgttgtgcata |
140 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4163228 |
cagtcttttatatgcaagtaaggggaacatgttgtgcata |
4163189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 160 - 227
Target Start/End: Complemental strand, 4163199 - 4163132
Alignment:
| Q |
160 |
tgttgtgcataccctatagcttttttattaattataaatcgtaaattacaatttcggtccctaaatta |
227 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
4163199 |
tgttgtgcatatcctatagcttttttattaattataaatcgtaaattacaattttggtccctaaatta |
4163132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University