View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16135_high_4 (Length: 431)
Name: NF16135_high_4
Description: NF16135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16135_high_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 103 - 418
Target Start/End: Original strand, 48143595 - 48143924
Alignment:
| Q |
103 |
tatatatatatgcaaatgtgttgttagataaaatgaatgaatatgacgtatgatataggacggcttagttgagatcgtggtgaagagtctgtctgagttg |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48143595 |
tatatatatatgcaaatgtgttgttagataaaatgaatgaatatgacgtatgatataggacggcttagttgagatcgtggtgaagagtctgtctgagttg |
48143694 |
T |
|
| Q |
203 |
aaattctaaaacaaaactgtcttgaatggttgaaactagacaacacaatctgcttactgtgtttttgtctgttaaaaacctactac-------------a |
289 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
48143695 |
aaattctaaaacaaaactgtcttgaatggttgaaactagacaacacaatctgcttactgtgtttttgtctgttaaaaacctactacatttcagttttaga |
48143794 |
T |
|
| Q |
290 |
ttttcacaagcccattatatttatacgtggatggatatgatacaagttcatcattggtctagtttatttgtggtaatcgtgttaataatccagatatgca |
389 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
48143795 |
ttttcacaagcccattatatttatacgtggatggatatgatacaagttcatcattggtctagtttatttgtggtaatcgtgttaataatctagatatgca |
48143894 |
T |
|
| Q |
390 |
gtac-tttagtaggctggaaaagttaatta |
418 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |
|
|
| T |
48143895 |
gtacttttagtaggctggaaaagttaatta |
48143924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 54 - 113
Target Start/End: Original strand, 48143522 - 48143581
Alignment:
| Q |
54 |
atctgtcaattgtgagacagacgtggggtttgcatttaaaaaatgagattatatatatat |
113 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
48143522 |
atctgtcaattgtgagacagacgtgggatttgcatttaaaaaatgagattatatatatat |
48143581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University