View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16135_low_1 (Length: 776)
Name: NF16135_low_1
Description: NF16135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16135_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 534; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 229 - 762
Target Start/End: Original strand, 51190421 - 51190954
Alignment:
| Q |
229 |
gtgatggttgtctctgaataaagatttcaagatttggatcttcacttaaatttgaagggactcttaagaatcttgagctgaatgaaaaggtgaagtttct |
328 |
Q |
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| T |
51190421 |
gtgatggttgtctctgaataaagatttcaagatttggatcttcacttaaatttgaagggactcttaagaatcttgagctgaatgaaaaggtgaagtttct |
51190520 |
T |
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| Q |
329 |
gatgtcactttcttcaaccatatacctgcaaagaggacaagtagagtgactttcaagccacttgtcaatacaattcatatgaaaagcatgcttgcatttc |
428 |
Q |
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| T |
51190521 |
gatgtcactttcttcaaccatatacctgcaaagaggacaagtagagtgactttcaagccacttgtcaatacaattcatatgaaaagcatgcttgcatttc |
51190620 |
T |
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| Q |
429 |
ggcaacaatctcagaatctcctcgtcttcaaatttcgataaacaaacggtacattctaagccttgtttggatccttttaaagaagagaatttgaagaaag |
528 |
Q |
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| T |
51190621 |
ggcaacaatctcagaatctcctcgtcttcaaatttcgataaacaaacggtacattctaagccttgtttggatccttttaaagaagagaatttgaagaaag |
51190720 |
T |
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| Q |
529 |
gaagtgtttcaattactttttgttcaacgccagaatttatagacctcgatcgagtttgtcctagattgttttgaagattaagagagtttgggtttagaag |
628 |
Q |
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| T |
51190721 |
gaagtgtttcaattactttttgttcaacgccagaatttatagacctcgatcgagtttgtcctagattgttttgaagattaagagagtttgggtttagaag |
51190820 |
T |
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| Q |
629 |
atgaataggagtaacacgacagaatttgacatatacaagtaagataaaagttaggaaaaacattatggaaagtactattattacaacacctttacttgga |
728 |
Q |
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| T |
51190821 |
atgaataggagtaacacgacagaatttgacatatacaagtaagataaaagttaggaaaaacattatggaaagtactattattacaacacctttacttgga |
51190920 |
T |
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| Q |
729 |
gtaacaccttttggtaactctgccatgttctgtg |
762 |
Q |
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| T |
51190921 |
gtaacaccttttggtaactctgccatgttctgtg |
51190954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 177; E-Value: 5e-95
Query Start/End: Original strand, 19 - 199
Target Start/End: Original strand, 51190205 - 51190385
Alignment:
| Q |
19 |
catgaagcatttcactattcaatgataacaaatctgaagaattaagatcactccacctactccttgtaacaacatcagagatcaatattttatgattaat |
118 |
Q |
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| T |
51190205 |
catgaagcatttcactattcaatgataacaaatctgaagaattaagatcactccacctactccttgtaacaacatcagagatcaatattttatgattaat |
51190304 |
T |
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| Q |
119 |
catatgcaaaggttgttcttgcttccactttgtaacattgctgcttccaccttcttcatgatcaagaagaacaagttcatg |
199 |
Q |
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| T |
51190305 |
catatgcaaagtttgttcttgcttccactttgtaacattgctgcttccaccttcttcatgatcaagaagaacaagttcatg |
51190385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 354 - 541
Target Start/End: Complemental strand, 33512540 - 33512353
Alignment:
| Q |
354 |
ctgcaaagaggacaagtagagtgactttcaagccacttgtcaatacaattcatatgaaaagcatgcttgcatttcggcaacaatctcagaatctcctcgt |
453 |
Q |
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| T |
33512540 |
ctgcaaataggacaacttgagtgtttctcaagccaatgatcaatacaatcaatatgaaaagcatgtttacattttggtaacaatcttaaaatttctatgt |
33512441 |
T |
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| Q |
454 |
cttcaaatttcgataaacaaacggtacattctaagccttgtttggatccttttaaagaagagaatttgaagaaaggaagtgtttcaat |
541 |
Q |
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| T |
33512440 |
cttcgaatttcgacaaacatattgaacattccaacccttgttttgaacctttgagagaagagaatttgaaaaaaggaagtgattcaat |
33512353 |
T |
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