View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16135_low_10 (Length: 373)
Name: NF16135_low_10
Description: NF16135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16135_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 4 - 332
Target Start/End: Complemental strand, 61543 - 61212
Alignment:
| Q |
4 |
tccaagaatatggtagaaatgaatgaaattagaaagagaaatgattggtgtgtagagaaagaatgaatgggtgatagataaaacttatactgtccgtaaa |
103 |
Q |
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| T |
61543 |
tccaagaatttggtagaaatgaatgaaattagaaagagaaatgattggtgtgtagagaaagaatgaatgggtgatagataaaacttattctgtccgtaaa |
61444 |
T |
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| Q |
104 |
tttcgatatccaaaggtcccaatttgttgtcatggttgttataaacatttcatttgaattagttatcttcatttcgtcttctctgtccgtattctctatt |
203 |
Q |
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| T |
61443 |
tttcgatatccaaaggtcccaatttgttgtcatggttgttataaacatttcatttgaattagttatcttcatttcgtcttctctctccgtattctctatt |
61344 |
T |
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| Q |
204 |
ctcccaacccaatctatgtacgtgtatgcatgtattgtattgtaactgcatctc--tcgcacagacacttttgatcgaatgatcctgcccagacatattt |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||| |
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| T |
61343 |
ctcccaacccaatctatgtacgtgtatgcatgtattgtattgtaactgcatctctgtagcacagacacttttgatcgaatgatcctacccagacatattt |
61244 |
T |
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| Q |
302 |
-ctttttaatttgttattgttattataacatg |
332 |
Q |
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| T |
61243 |
cctttttaatttgttattgttattataacatg |
61212 |
T |
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