View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16135_low_11 (Length: 371)
Name: NF16135_low_11
Description: NF16135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16135_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 151; Significance: 8e-80; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 10 - 184
Target Start/End: Original strand, 7369224 - 7369398
Alignment:
| Q |
10 |
cgaagaatatagtgtcaatgtagcactttaggcaacctgcaggaggaggaacccatgctgggacatgattgatagatacgtcttatgtaccattctaatc |
109 |
Q |
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| T |
7369224 |
cgaaaaatatagcgtcaatgtagcactttaggtaacctgcaggaggaggaacccatgctgggacatgattgatagacacgtcttaggtaccattctaatc |
7369323 |
T |
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| Q |
110 |
cttgataaaaacaacgctgcataagtgtgagtttgctaaggagaagaaaccctgctttctcgtatacgtatgctc |
184 |
Q |
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| T |
7369324 |
cttgataaaaacaacgctgcataagtgtgagtttgctaaggagaagaaaccctgctttcccgtatacgtatgctc |
7369398 |
T |
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Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 168 - 244
Target Start/End: Original strand, 7369410 - 7369486
Alignment:
| Q |
168 |
ctcgtatacgtatgctcataatgcttccatatactacataaattcatagcaaaataataagatgaactaacataaca |
244 |
Q |
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| T |
7369410 |
ctcgtatacgtatgctcataatgcttccatatactacataaattcatagcaaaataataagatgaactaacataaca |
7369486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 314 - 371
Target Start/End: Original strand, 7369554 - 7369611
Alignment:
| Q |
314 |
acaagagaaaacttacaagtggtgatatcaataaaaagatggaaactagaagctgttt |
371 |
Q |
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| T |
7369554 |
acaagggaaaacttataagtggtgatatcaataaaaagatggaaactagaagctgttt |
7369611 |
T |
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