View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16135_low_12 (Length: 300)
Name: NF16135_low_12
Description: NF16135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16135_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 14 - 288
Target Start/End: Original strand, 12746637 - 12746924
Alignment:
| Q |
14 |
atatagggcaacccggcctctgcacaaataatgaacaaatacgtggacaaagggtctccttgatgcaaacctttcccaggaataactggcccaaccgatt |
113 |
Q |
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| T |
12746637 |
atatagggctacccgacctctgcacaaataatgaacaaatacgtggacaaagggtctccttgatgcaaacctttcccgggaataactggcccaaccgatt |
12746736 |
T |
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| Q |
114 |
cattgttgaccaacgtagaatagtcaattgacaccacgcacatattcatccaatgtatccatttatcattaaagcccattttcatcatcattcaaaaaat |
213 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
12746737 |
cattgttgaccaacgtagaatagtcaattggcaccacgcacatattcatccaatgtatccatttatcattaaagctcattttcatcatcattcaaaaaat |
12746836 |
T |
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| Q |
214 |
ctcagtcgatacgatcatacgctttac-------------tagtgtcgcacatccctcattaccacgagtctttgttttcatgtgatg |
288 |
Q |
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|||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12746837 |
ttcagtcgatacgatcatacgttttactaatgtccagttttagcgtcgcacatccctcattaccacgagtctttgttttcatgtgatg |
12746924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 14 - 288
Target Start/End: Original strand, 12809721 - 12810008
Alignment:
| Q |
14 |
atatagggcaacccggcctctgcacaaataatgaacaaatacgtggacaaagggtctccttgatgcaaacctttcccaggaataactggcccaaccgatt |
113 |
Q |
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| T |
12809721 |
atatagggctacccggcctctgcacaaataatgaacaaatacgtggacaaagggtctccttgatgcaaacctttcccaggaataactggcccaaccgatt |
12809820 |
T |
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| Q |
114 |
cattgttgaccaacgtagaatagtcaattgacaccacgcacatattcatccaatgtatccatttatcattaaagcccattttcatcatcattcaaaaaat |
213 |
Q |
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| T |
12809821 |
cattgttgaccaacgtagaatagtcaattggcaccacgcacatattcatccaatgtatccatttatcattaaagctcattttcatcatcattcaaaaaat |
12809920 |
T |
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| Q |
214 |
ctcagtcgatacgatcatacgcttta-------------ctagtgtcgcacatccctcattaccacgagtctttgttttcatgtgatg |
288 |
Q |
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||||||||||| ||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
12809921 |
ttcagtcgatacaatcatacgctttattaatgtccagttttagcgtcgtacatccctcattaccacgagtctttgttttcatgtgatg |
12810008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 201
Target Start/End: Original strand, 17660525 - 17660631
Alignment:
| Q |
95 |
ataactggcccaaccgattcattgttgaccaacgtagaatagtcaattgacaccacgcacatattcatccaatgtatccatttatcattaaagcccattt |
194 |
Q |
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| T |
17660525 |
ataactggcccaacaacttcattgttaaccaacacataatagtctacagactccagacacatgctcatccaatgaatccatttgtcatcaaagcccattt |
17660624 |
T |
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| Q |
195 |
tcatcat |
201 |
Q |
| |
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| ||||| |
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| T |
17660625 |
taatcat |
17660631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 30 - 232
Target Start/End: Original strand, 21976939 - 21977146
Alignment:
| Q |
30 |
cctctgcacaaataatgaacaaatacgtggacaaagggtctccttgatgcaaacctttcccaggaataactggcccaaccgattcattgttgaccaacgt |
129 |
Q |
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|||| |||||||||||||| ||||||| ||| ||||||||| ||||| |||||||| | ||||||||||||||||| || |||||| ||||||||||| |
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| T |
21976939 |
cctccgcacaaataatgaaaaaatacggggataaagggtctacttgacgcaaacctcttccaggaataactggccccactaattcatagttgaccaacgc |
21977038 |
T |
|
| Q |
130 |
agaatagtcaattgacaccacgcacatattcatccaatgtatccatttatcattaaagcccattttcatcatca-----ttcaaaaaatctcagtcgata |
224 |
Q |
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||| || |||| ||| || |||||| |||| |||||||||||| |||||||| | ||| |||||| ||||| |||||||| || ||||||||| |
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| T |
21977039 |
agagtaatcaaccgacttaacacacatactcattcaatgtatccatctatcattataaccccttttcagcatcacctgcttcaaaaattcccagtcgata |
21977138 |
T |
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| Q |
225 |
cgatcata |
232 |
Q |
| |
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|||||||| |
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| T |
21977139 |
cgatcata |
21977146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 30 - 196
Target Start/End: Original strand, 24410470 - 24410636
Alignment:
| Q |
30 |
cctctgcacaaataatgaacaaatacgtggacaaagggtctccttgatgcaaacctttcccaggaataactggcccaaccgattcattgttgaccaacgt |
129 |
Q |
| |
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|||| |||||||||||||||||||||| ||||| | ||||||| | |||||| | || |||||||| || | | |||||||||||||||||| | |
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| T |
24410470 |
cctccgcacaaataatgaacaaatacggggacatcgactctccttaacataaacctcgcacaagaataactaacctagctgattcattgttgaccaacat |
24410569 |
T |
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| Q |
130 |
agaatagtcaattgacaccacgcacatattcatccaatgtatccatttatcattaaagcccattttc |
196 |
Q |
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||| ||||||| ||| ||||||| ||| ||||||| ||||||||| |||||||||| | ||||||| |
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| T |
24410570 |
agagtagtcaaccgactccacgcagatactcatccattgtatccatctatcattaaaactcattttc |
24410636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 201
Target Start/End: Complemental strand, 14688277 - 14688171
Alignment:
| Q |
95 |
ataactggcccaaccgattcattgttgaccaacgtagaatagtcaattgacaccacgcacatattcatccaatgtatccatttatcattaaagcccattt |
194 |
Q |
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|||||||||||||| ||||||||| |||||| | ||||||| | ||| ||| ||||| |||||||||| |||||||| |||| ||||||||||| |
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| T |
14688277 |
ataactggcccaacaacttcattgttaaccaacacataatagtctacagactccaaacacatgctcatccaatggatccatttgtcatcaaagcccattt |
14688178 |
T |
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| Q |
195 |
tcatcat |
201 |
Q |
| |
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| ||||| |
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|
| T |
14688177 |
taatcat |
14688171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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