View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16135_low_18 (Length: 241)
Name: NF16135_low_18
Description: NF16135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16135_low_18 |
 | |
|
| [»] scaffold0577 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 18 - 237
Target Start/End: Complemental strand, 6769375 - 6769156
Alignment:
| Q |
18 |
ctcagacttttggagattaatagcctgcctggattccgcttcataggaagctagaatatctttcatgacaatagcttcatttgttgaacctttgaagaag |
117 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6769375 |
ctcaggcttttggagattaatagcctgcccggatgccgcttcataggaagctagaatatctttcatgacaatagcttcatttgttgaacctttgaagaag |
6769276 |
T |
|
| Q |
118 |
agaaaacagtcgtcagcaaagagtaagtgagaaataataggtgcagctgtgcaaatcttaacatcatgtaaaattccttgcccctctgctcgtttgataa |
217 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
6769275 |
agaaaacagtcgacagcaaagagtaagtgagaaataataggtgcagctgtgcaaatcttaacaccatgtaaaactccttgcccctctgctcgtttgataa |
6769176 |
T |
|
| Q |
218 |
gtgctgataatccttctgcg |
237 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
6769175 |
gtgctgataatccttctgcg |
6769156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0577 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0577
Description:
Target: scaffold0577; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 170
Target Start/End: Original strand, 4225 - 4283
Alignment:
| Q |
112 |
aagaagagaaaacagtcgtcagcaaagagtaagtgagaaataataggtgcagctgtgca |
170 |
Q |
| |
|
||||| |||||||| ||||| |||||||| | |||||||||||| |||||| ||||||| |
|
|
| T |
4225 |
aagaaaagaaaacaatcgtctgcaaagagaaggtgagaaataattggtgcatctgtgca |
4283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 151
Target Start/End: Complemental strand, 14126628 - 14126583
Alignment:
| Q |
106 |
cctttgaagaagagaaaacagtcgtcagcaaagagtaagtgagaaa |
151 |
Q |
| |
|
||||||||||| | ||||||||| ||||||||||||| |||||||| |
|
|
| T |
14126628 |
cctttgaagaacaaaaaacagtcatcagcaaagagtaggtgagaaa |
14126583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University