View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16135_low_19 (Length: 237)
Name: NF16135_low_19
Description: NF16135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16135_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 45477345 - 45477568
Alignment:
| Q |
1 |
aattaccactagttgttggaattacaaccaaactaatgctttgtttatgctgtcttctcaagttaatagtatcattcaaaagtccctatgtagtaatctt |
100 |
Q |
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| T |
45477345 |
aattaccactagttgttggaattacaaccaaactaatgctttgtttatgctgtcttctcaagttaatagtatcattcaaaagtccctatgtagtaatctt |
45477444 |
T |
|
| Q |
101 |
gcagtttaattttgcattcaaaaacaaaatacttatattaatttc---taattattattattgattattgatccattccttggttgctaggtgtgcactt |
197 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
45477445 |
gcagtttaattttgcattcacaaacaaaatacttatattaatttcttattattattattattgattattgatccattccttggttgctaggtgtgcgctt |
45477544 |
T |
|
| Q |
198 |
ccgtccccatccctaggcataagc |
221 |
Q |
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|||||||||||||||||||||||| |
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| T |
45477545 |
ccgtccccatccctaggcataagc |
45477568 |
T |
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