View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16135_low_2 (Length: 582)
Name: NF16135_low_2
Description: NF16135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16135_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 450; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 12 - 565
Target Start/End: Complemental strand, 33491567 - 33491010
Alignment:
| Q |
12 |
tcatcaagtgttggaagaaaacctgaggtttgtcttataagtaaaccaaaagtnnnnnnnnnntaaagctaaactacaattatggttaatagtgccaaaa |
111 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
33491567 |
tcatcaagtgttggaagaaaaccttaggtttgtcttgtaagtaaaccaaaagtaaaaaaaaaataaagctaaactacaattatggttaatagtgccaaaa |
33491468 |
T |
|
| Q |
112 |
ttgtagttaattacgtgcaatggatgataaattgagttgtgacaactttttatattcataatcattcacttaatgtaatattaacaacaccacatgtttt |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
33491467 |
ttgtagttaattacgtgcaatggatgataaacagagttgcgacaactttttatattcataaccattcacttaatgtaatattaacaacaccacatgtttt |
33491368 |
T |
|
| Q |
212 |
aattgtgttaaccattcaattttttgtcgaattttgtgtgtcagccattaaaaggcttcaagcaaaaaccctcaaattagtatta---gatcaaacacaa |
308 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |||||||||||| |
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| T |
33491367 |
aattgtgttaaccattcaattttttgtcgaattttgtgtgtcagccattaaaaggcttcaagcaaaaactcttaaattagtattattagatcaaacacaa |
33491268 |
T |
|
| Q |
309 |
gaagggttagggagctagcgggtagcgttttgatgatattggggttggc-aatgtcacatgacattggcactccaatatcatcaaagtgctacccagagc |
407 |
Q |
| |
|
||||| ||||||||||||||||||||| |||||||| |||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
33491267 |
gaaggattagggagctagcgggtagcgctttgatgacattgtggttggccaatgtcacatgacattggcaccccaatatcatcaaagtgctacccagagc |
33491168 |
T |
|
| Q |
408 |
tagtaaagattaaaagtatcatgtaaataatggatcaagaactaacttgatgagcataagaaggttggttatatatagaaatgtagcttccttgacattt |
507 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
33491167 |
tagtaaagattaaaagtatcatgtaaataatggatcaagaactaacttgatgagcataagaaggttgattatatatagaaatgtagcttccttgacattt |
33491068 |
T |
|
| Q |
508 |
ctgtaaatcatgaaggcatgcaagattatgagacaagactcccacaacagcaccaaat |
565 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33491067 |
ctgtaaatcatgaaggcatgcaagattatgagacaagactcccacaacagcaccaaat |
33491010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 403 - 556
Target Start/End: Complemental strand, 33419974 - 33419821
Alignment:
| Q |
403 |
agagctagtaaagattaaaagtatcatgtaaataatggatcaagaactaacttgatgagcataagaaggttggttatatatagaaatgtagcttccttga |
502 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33419974 |
agagctagtaaagattaaaagtatcatgtaaataatggatcaagaactaacttgatgagcataagaaggttggttatatatagaaatgtagcttccttga |
33419875 |
T |
|
| Q |
503 |
catttctgtaaatcatgaaggcatgcaagattatgagacaagactcccacaaca |
556 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33419874 |
catttctgtaaatcatgaaggcatgcaagattatgagacaagactcccacaaca |
33419821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 12 - 326
Target Start/End: Complemental strand, 33413140 - 33412830
Alignment:
| Q |
12 |
tcatcaagtgttggaagaaaacctgaggtttgtcttataagtaaaccaaaagtnnnnnnnnnntaaagctaaactacaattatggttaatagtgc-caaa |
110 |
Q |
| |
|
|||||||||||||||| || |||| ||||||||||| | | |||||||||||| ||||||||||||||||||||||||||||||| |||| |
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| T |
33413140 |
tcatcaagtgttggaaaaataccttaggtttgtcttgtgactaaaccaaaagtaaaaaaagg--aaagctaaactacaattatggttaatagtgctcaaa |
33413043 |
T |
|
| Q |
111 |
attgtagttaattacgtgcaatggatgataaattgagttgtgacaactttttatattcataatcattcacttaatgtaatattaacaacaccacatgttt |
210 |
Q |
| |
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|| |||||||||| | |||||||||||||||| |||||| | |||||||||| |||||| | | ||||| || ||||| |||| | ||||||| ||| |
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|
| T |
33413042 |
atcgtagttaattgcatgcaatggatgataaac-gagttgcggcaactttttagattcattaaccatcactgaacgtaat--taaccataccacatattt |
33412946 |
T |
|
| Q |
211 |
taattgtgttaaccattcaattttttgtcgaattttgtgtgtcagccattaaaaggcttcaag-caaaaaccctcaaattagtattagatcaaacacaag |
309 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||| |
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|
| T |
33412945 |
taattgtgttaaccattcaattttttatcgaattttgtgggtcagccattaaaaggcttcaagccaagaaccctcaaattagtattagatcaaa-tcaag |
33412847 |
T |
|
| Q |
310 |
aagggttagggagctag |
326 |
Q |
| |
|
||||||||| ||||||| |
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|
| T |
33412846 |
aagggttagagagctag |
33412830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 442 - 563
Target Start/End: Original strand, 28812655 - 28812776
Alignment:
| Q |
442 |
tcaagaactaacttgatgagcataagaaggttggttatatatagaaatgtagcttccttgacatttctgtaaatcatgaaggcatgcaagattatgagac |
541 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||| |
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|
| T |
28812655 |
tcaagaactaacttgatgagcataagaaggttggtcatatatagaaatgtagcttccttgacacttctgtaaatcattaaggtctgcaagattatgagac |
28812754 |
T |
|
| Q |
542 |
aagactcccacaacagcaccaa |
563 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
28812755 |
aagactcccacaacagcaccaa |
28812776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 12 - 326
Target Start/End: Complemental strand, 33420273 - 33419967
Alignment:
| Q |
12 |
tcatcaagtgttggaagaaaacctgaggtttgtcttataagtaaaccaaaagtnnnnnnnnnntaaagctaaactacaattatggttaatagtgc-caaa |
110 |
Q |
| |
|
||||||||||||||||||| |||| |||||||||| || ||| |||||||||| ||| |||||| ||||||||||||||||||||| |||| |
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|
| T |
33420273 |
tcatcaagtgttggaagaataccttaggtttgtctcatgagtgaaccaaaagtaaaaaaaaattaa-gctaaattacaattatggttaatagtgctcaaa |
33420175 |
T |
|
| Q |
111 |
attgtagttaattacgtgcaatggatgataaattgagttgtgacaactttttatattca-taatcattcacttaatgtaatattaacaacaccacatgtt |
209 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||||||| |||| |||| |||||||| ||| ||| || | || ||| |||||| | | ||||| | |
|
|
| T |
33420174 |
attgtagttaattacgtgcaattgatgataaa-tgagttgcgacacctttatatattcattaaccatccattaaacgta--attaaccataacacataat |
33420078 |
T |
|
| Q |
210 |
ttaattgtgttaaccattcaattttttgtcgaa-ttttgtgtgtcagccattaaaaggcttcaagcaaaaaccctcaaattagtattagatcaaacacaa |
308 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |||| ||||||| |||||||||||| || || | |||||||||| |||||||||||||||| |
|
|
| T |
33420077 |
ttaattgtgttaaccattcaattatttgtcgaatttttttgtgtcaaccattaaaaggc----aggaata---ctcaaattagcattagatcaaacacaa |
33419985 |
T |
|
| Q |
309 |
gaagggttagggagctag |
326 |
Q |
| |
|
||| | |||| ||||||| |
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|
| T |
33419984 |
gaatgattagagagctag |
33419967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 403 - 502
Target Start/End: Complemental strand, 33412837 - 33412742
Alignment:
| Q |
403 |
agagctagtaaagattaaaagtatcatgtaaataatggatcaagaactaacttgatgagcataagaaggttggttatatatagaaatgtagcttccttga |
502 |
Q |
| |
|
|||||||||||||||||||| ||||||| || ||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
33412837 |
agagctagtaaagattaaaa-tatcatgccaacaattgatcaagaactaacttgatgagcataagaa---tggttatatatagaaatgtagcttccttga |
33412742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 311
Target Start/End: Original strand, 28812598 - 28812629
Alignment:
| Q |
280 |
ccctcaaattagtattagatcaaacacaagaa |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
28812598 |
ccctcaaattagtattagatcaaacacaagaa |
28812629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 357 - 403
Target Start/End: Original strand, 3647508 - 3647554
Alignment:
| Q |
357 |
caatgtcacatgacattggcactccaatatcatcaaagtgctaccca |
403 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||| | |||||||||||| |
|
|
| T |
3647508 |
caatgtcacatgacattggcaccccaatgtcacccaagtgctaccca |
3647554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 357 - 399
Target Start/End: Complemental strand, 22435387 - 22435345
Alignment:
| Q |
357 |
caatgtcacatgacattggcactccaatatcatcaaagtgcta |
399 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| | |||||||| |
|
|
| T |
22435387 |
caatgtcacatgacattggcaccccaatatcacccaagtgcta |
22435345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 402
Target Start/End: Original strand, 15057138 - 15057183
Alignment:
| Q |
357 |
caatgtcacatgacattggcactccaatatcatcaaagtgctaccc |
402 |
Q |
| |
|
|||||||||||||||||| ||| ||||| ||| ||||||||||||| |
|
|
| T |
15057138 |
caatgtcacatgacattgacaccccaatgtcaccaaagtgctaccc |
15057183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 402
Target Start/End: Complemental strand, 18182537 - 18182492
Alignment:
| Q |
357 |
caatgtcacatgacattggcactccaatatcatcaaagtgctaccc |
402 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||| | ||||||||||| |
|
|
| T |
18182537 |
caatgtcacatgacattggcaccccaatgtcacccaagtgctaccc |
18182492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 402
Target Start/End: Original strand, 18182623 - 18182668
Alignment:
| Q |
357 |
caatgtcacatgacattggcactccaatatcatcaaagtgctaccc |
402 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||| | ||||||||||| |
|
|
| T |
18182623 |
caatgtcacatgacattggcaccccaatgtcacccaagtgctaccc |
18182668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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