View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16135_low_20 (Length: 228)
Name: NF16135_low_20
Description: NF16135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16135_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 19 - 219
Target Start/End: Complemental strand, 41981182 - 41980982
Alignment:
| Q |
19 |
gctactccttcccttcacttccctccgcccgctacctcctccgcaccttcaccgtctatgacaactacgacgcaaagtctcgtcctccttccttcgatgt |
118 |
Q |
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| T |
41981182 |
gctactccttcccttcacttccctccgcccgctacctcctccgcaccttcaccgtctacgacaactacgacgcaaagtctcgtcctccttccttcgacgt |
41981083 |
T |
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| Q |
119 |
cgcactctcctccaccatcattttcaactggcgttctccctggcctgaatccacagcacgcgacggcgcttatgctgatcttttcgcttttcttctcact |
218 |
Q |
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| T |
41981082 |
cgcactctcctccaccatcattttcaactggcgttctccctggcctgaatccacagcacgcgacggcgcttatgctgatcttttcgcttttcttcacact |
41980983 |
T |
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| Q |
219 |
c |
219 |
Q |
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| T |
41980982 |
c |
41980982 |
T |
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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 115
Target Start/End: Original strand, 22083702 - 22083769
Alignment:
| Q |
48 |
cgctacctcctccgcaccttcaccgtctatgacaactacgacgcaaagtctcgtcctccttccttcga |
115 |
Q |
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||||||||| | ||||||||| |||||| ||||||||||||| ||||| | ||||||||||||||| |
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| T |
22083702 |
cgctacctcattcgcaccttcgtcgtctacgacaactacgacggcaagtcgcatcctccttccttcga |
22083769 |
T |
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