View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16135_low_3 (Length: 493)
Name: NF16135_low_3
Description: NF16135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16135_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 400; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 1 - 480
Target Start/End: Complemental strand, 47386546 - 47386047
Alignment:
| Q |
1 |
aaccttgtacctttatctatatttttgtaagattcttaggtaaggcattcaaaacgtgcggtttgcattctactcaaactcgc----ttagtgtttcact |
96 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||| |
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| T |
47386546 |
aaccttgtacctttatctatatttttgtaagattcttaggtaaggcattcaaaacgtgcggtttgcattctactcaaactcaccgagtgagtgtttcact |
47386447 |
T |
|
| Q |
97 |
attctgctgctacatctgtatcgtatcactgcgctgctcgtgtgtccttcttggaacaaa-----gtaacgataataactaccgacaagactatagttta |
191 |
Q |
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| T |
47386446 |
attctgctgctacatctgtatcgtatcactgcgctgctcgtgtgtccttcttggaacaaattaaagtaacgataataactaccgacaagactatagttta |
47386347 |
T |
|
| Q |
192 |
tgagacaaacacgggaaattcattaaacaaaacaagatgaatgcacgcacaaaaa---------tatttaaatcttgtatttt--attaatacatatata |
280 |
Q |
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| T |
47386346 |
tgatacaaacacgggaaattcattaaacaaaacaagatgaatgcacgcacaaaaaggacaaaaatatttaaatcttgtattttttattaatacatatata |
47386247 |
T |
|
| Q |
281 |
aatagaactgaaaatataaatagttttaggaagtagtagccactgccacccaaagggcttcaccccaatttaaaaattctttgttttcattttcaccacc |
380 |
Q |
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| T |
47386246 |
aatagaactgaaaatataaatagttttaggaagtagtagccactgccacccaaagggattcaccccaatttaaaaattctttgttttcattttcaccacc |
47386147 |
T |
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| Q |
381 |
ttctttgcaccttcttgcccactcatacttttccattcttgcgtcactacttttcatcttctcacatgcaacaacttcttctagttccaccttctctgct |
480 |
Q |
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| T |
47386146 |
ttctttgcaccttcttgcccactcatacttttccattcttgcgtcactacttttcatcttctcacatgcaacaacttcctctagttccaccttctctgct |
47386047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 197 - 388
Target Start/End: Original strand, 47372630 - 47372820
Alignment:
| Q |
197 |
caaacacgggaaattcattaaacaaaacaagatgaatgcacgcacaaaaatattta-aatcttgtattttattaatacatatataaatagaactgaaaat |
295 |
Q |
| |
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|||||||||||||||||||||||||| || | ||||||||| | ||| | || | |||||||| ||||||||||||| ||| |||||| |||||| |
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| T |
47372630 |
caaacacgggaaattcattaaacaaagcaggttgaatgcacaaaaaaacaaatacataatcttgttttttattaatacagata--aatagatgggaaaat |
47372727 |
T |
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| Q |
296 |
ataaatagttttaggaagtagtagccactgccacccaaag-----ggcttcaccccaatttaaaaattctttgttttcattttcaccaccttctttgc |
388 |
Q |
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| T |
47372728 |
ataaatagttttaggaagtagtagccac-----ccaaaagttcacgttctcaccccaatttaacgattcattgttttcattttcaccaccttctttgc |
47372820 |
T |
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