View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16135_low_4 (Length: 463)
Name: NF16135_low_4
Description: NF16135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16135_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 447
Target Start/End: Original strand, 40128171 - 40128617
Alignment:
| Q |
1 |
tgtttgctctatcaatctgtaaacacaaatgaactatgcaaattaatatttgatttaaatgaaaagtgctataataattaagtaaagctaaattaaggct |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
40128171 |
tgtttgctctatcaatctgttaacacaaatgaactatgcaaattaatatttgatttaaatgaaaagtgctataataattaagtaaagttaaattaaggct |
40128270 |
T |
|
| Q |
101 |
atatatttgcttctataaccttcaccaccgtgcagtttctgcatgaatcattgtctatgcaaaccctgcacatatgtatatgaaacnnnnnnnncacggg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
40128271 |
atatatttgcttctataaccttcaccaccgtgcagtttctgcatgaatcattgtctatgcaaaccctgcacatatgtatatgaaacaaaaaaacactggg |
40128370 |
T |
|
| Q |
201 |
atgatcaaattttttaatccatagcatgaactacggctgaactaacaatcaaatagtgtgtatcttttttggttaacaaagaagaagttgaacaaggaaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40128371 |
atgatcaaattttttaatccatagcatgaactccgtctgaactaacaatcaaatagtgcgtatcttttttggttaacaaagaagaagttgaacaaggaaa |
40128470 |
T |
|
| Q |
301 |
gtaacatagtacattacctaggtggatggattctttctttgagtgactcaatttctctatcgatgtgaggctgctggtaaacaatctccatatcctctac |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40128471 |
gtaacatagtacattacctaggtggatggattctttcttttagtgactcaatttctctatcgatgtgaggctgctggtaaacaatctccatatcctctac |
40128570 |
T |
|
| Q |
401 |
gaaacaatggttcaacttgagctttgttggctgataagcatgcatgt |
447 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40128571 |
gaaacaatggttcaacttgagctttgttggctgataagcatgcatgt |
40128617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University