View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16135_low_6 (Length: 431)
Name: NF16135_low_6
Description: NF16135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16135_low_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 363; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 14 - 376
Target Start/End: Complemental strand, 32940494 - 32940132
Alignment:
| Q |
14 |
agacgacagcgtacgaggttagagtttcttgttttggaaatattttacgattggtgagtatattgtttccaagatattgggaggaagagattgtaggcat |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32940494 |
agacgacagcgtacgaggttagagtttcttgttttggaaatattttacgattggtgagtatattgtttccaagatattgggaggaagagattgtaggcat |
32940395 |
T |
|
| Q |
114 |
caagaagagtagaaatgtgatgagtttaattagaaactccatgcttgttgtaggaagagatagtgggaagggaaactattttgaaaccggttataaaaca |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32940394 |
caagaagagtagaaatgtgatgagtttaattagaaactccatgcttgttgtaggaagagatagtgggaagggaaactattttgaaaccggttataaaaca |
32940295 |
T |
|
| Q |
214 |
actagcatatatataattagtttgaggagttgaaggagtatttccaatttgattaaaatattatgctgcaaatctgaccttactaatcatatgtttattt |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32940294 |
actagcatatatataattagtttgaggagttgaaggagtatttccaatttgattaaaatattatgctgcaaatctgaccttactaatcatatgtttattt |
32940195 |
T |
|
| Q |
314 |
ttaggtaagagattgacatttttgaaagtaatgtatctttagtttatttggggaggggaggta |
376 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32940194 |
ttaggtaagagattgacatttttgaaagtaatgtatctttagtttatttggggaggggaggta |
32940132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 39 - 138
Target Start/End: Complemental strand, 32921778 - 32921676
Alignment:
| Q |
39 |
ttcttgttttggaaatattttacgattggtgagta---tattgtttccaagatattgggaggaagagattgtaggcatcaagaagagtagaaatgtgatg |
135 |
Q |
| |
|
|||||||||||| || || ||||| || ||||||| | ||||||||||||||||||||| |||| |||| |||||| | |||||| |||||||||||| |
|
|
| T |
32921778 |
ttcttgttttgggaaaatcttacggttagtgagtaatatgttgtttccaagatattgggagtaagaaattgaaggcataatgaagagaagaaatgtgatg |
32921679 |
T |
|
| Q |
136 |
agt |
138 |
Q |
| |
|
||| |
|
|
| T |
32921678 |
agt |
32921676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 156
Target Start/End: Complemental strand, 32932262 - 32932121
Alignment:
| Q |
18 |
gacagcgtacgaggttagagtttcttgttttggaaatattttacgattggtgagtatattgtttccaagatattgggaggaagagattgtaggcatcaag |
117 |
Q |
| |
|
||||||||| || |||| |||||||||||| | || || || ||||| ||||||| |||||||| | |||||||||||||| ||||| |||||| || |
|
|
| T |
32932262 |
gacagcgtaagatgttaaggtttcttgtttttggaaaatctttcgattagtgagtaggttgtttcctaaatattgggaggaagtgattgcaggcattaac |
32932163 |
T |
|
| Q |
118 |
aagagtagaaatgtg---atgagtttaattagaaactccatg |
156 |
Q |
| |
|
||||||| ||| ||| |||||| ||||||| ||||||||| |
|
|
| T |
32932162 |
aagagtaaaaaagtggtaatgagtgtaattaggaactccatg |
32932121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 127
Target Start/End: Complemental strand, 32910391 - 32910301
Alignment:
| Q |
37 |
gtttcttgttttggaaatattttacgattggtgagtatattgtttccaagatattgggaggaagagattgtaggcatcaagaagagtagaa |
127 |
Q |
| |
|
|||||||||||| | || || || ||||| ||||||| |||||||| | |||||| ||||||| ||||| |||||| || |||||||||| |
|
|
| T |
32910391 |
gtttcttgtttttggaaaatctttcgattagtgagtaggttgtttcctaaatattgtgaggaagtgattgcaggcattaacaagagtagaa |
32910301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 37 - 138
Target Start/End: Complemental strand, 11822300 - 11822196
Alignment:
| Q |
37 |
gtttcttgttttggaaatattttacgattggtgagta---tattgtttccaagatattgggaggaagagattgtaggcatcaagaagagtagaaatgtga |
133 |
Q |
| |
|
|||||||||||||| || || ||||| || ||||||| | ||||||||||||| ||||||| |||| || | |||||| | ||||||||||||||||| |
|
|
| T |
11822300 |
gtttcttgttttgggaaaatcttacggttagtgagtaatatgttgtttccaagattttgggagtaagaaatggaaggcattatgaagagtagaaatgtga |
11822201 |
T |
|
| Q |
134 |
tgagt |
138 |
Q |
| |
|
||||| |
|
|
| T |
11822200 |
tgagt |
11822196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University