View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16135_low_7 (Length: 427)
Name: NF16135_low_7
Description: NF16135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16135_low_7 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 427
Target Start/End: Original strand, 45476812 - 45477232
Alignment:
| Q |
1 |
aaaacatgaagtcacaaattgcggcatcagtggaccccaaaatggtggccaatcgggtaccacataattaggacaaaagcatctctacctcagaaaatag |
100 |
Q |
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| T |
45476812 |
aaaacatgaagtcacaaattgcggcatcagtggaccccaaaatggtggccaatcgggtaccacataatcaggacaaaagcatctctacctcagaaaatag |
45476911 |
T |
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| Q |
101 |
gaattcagacccacggaaacacgttcgcgaacatttattttcttcctagtcgtacaataaaatggaggatgaaac-----atgtaaataaatatgaatag |
195 |
Q |
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| T |
45476912 |
gaattcagacccacggaaacacgttcgcgaacatttattttcttcctagtcgtacaataaaatggaggatgaaacatgtaatgtaaatatatatgaatag |
45477011 |
T |
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| Q |
196 |
taggcccgagaatttatttatt--tacattaaaataaatattggaggggaagtgataaatagaaggcacatgatcccgtttcgcttgtnnnnnnnnnnnn |
293 |
Q |
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| T |
45477012 |
taggcgcgagaatttatttatttatatattaaaataaatattggaggggaagtgataaatagaaggcacat-atcccgtttcgcttgtaaaaaagaaaag |
45477110 |
T |
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| Q |
294 |
nnnnnnnncaaaccaacccaaacaaggatccatccatttcttcgttcatctgttcgtctaatccaacctagccgtatggacgtggcagccaccgccgtcc |
393 |
Q |
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| T |
45477111 |
aaaagaagcaaaccaacccaaacaaggatc------------cgttcatctgttcgtctaatccaacctagccgtatggacgtggcagccaccgccgtcc |
45477198 |
T |
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| Q |
394 |
tcctcctatcaccgccgtcttcttcaattacaac |
427 |
Q |
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| T |
45477199 |
tcctcctatcaccgccgccttcttcaattacaac |
45477232 |
T |
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