View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16135_low_9 (Length: 406)
Name: NF16135_low_9
Description: NF16135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16135_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 163 - 386
Target Start/End: Original strand, 52667909 - 52668133
Alignment:
| Q |
163 |
gaaaagttgacaaacagaatagattaaccattttaaacattctttttctcaaaatatttcattcataaaaaagataatctcaaaccctctctccatcttc |
262 |
Q |
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| T |
52667909 |
gaaaagttgacaaacagaatagattaaccattttaaacattccttttctcaaaatatttcattcataaaaaagataatctcaaaccctctctccatcttc |
52668008 |
T |
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| Q |
263 |
taaaccatgttcaaatcgtttcatatcaaatttaaaccctatgctctaaatcattatttagtgtcatccaattgaa-gattaaattcacacatcaacaat |
361 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
52668009 |
taaaccatgttcaaatcgtttcatatcaaatttaaaccctatgctctaaatcattatttagtgtcatccaattgaaggattaaattcacacatcaacaat |
52668108 |
T |
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| Q |
362 |
accagaataataatcaatagtaaaa |
386 |
Q |
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| T |
52668109 |
accagaataataatcaatagtaaaa |
52668133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 27 - 164
Target Start/End: Original strand, 52667715 - 52667852
Alignment:
| Q |
27 |
gaacttaatcctcatttcttaaaatttcaagaatcaaataatttcatctgtttcctctaacttaaaacccttaaatcccaacactttttggtcactatta |
126 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52667715 |
gaacttaatcctcatttcttaaaatttcaagaatcaaataatttcatcagtttcctctaacttaaaacccttaaatcccaacactttttggtcactatta |
52667814 |
T |
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| Q |
127 |
tgagcaaaaaatcacttttagattcattaaacagctga |
164 |
Q |
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| T |
52667815 |
tgagcaaaaaatcacttttagattcattaaacaactga |
52667852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 43
Target Start/End: Original strand, 52667675 - 52667703
Alignment:
| Q |
15 |
aatattgagcttgaacttaatcctcattt |
43 |
Q |
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| T |
52667675 |
aatattgagcttgaacttaatcctcattt |
52667703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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