View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16136_low_1 (Length: 671)

Name: NF16136_low_1
Description: NF16136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16136_low_1
NF16136_low_1
[»] chr3 (1 HSPs)
chr3 (11-655)||(32760548-32761189)


Alignment Details
Target: chr3 (Bit Score: 627; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 627; E-Value: 0
Query Start/End: Original strand, 11 - 655
Target Start/End: Complemental strand, 32761189 - 32760548
Alignment:
Q  11 acatcatcatttgaattcttgtaagcttttgaatccatagaaattttccaatatgtttgtccatgccattgaagtattgcatcagaagaagttattgtca 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32761189 acatcatcatttgaattcttgtaagcttttgaatccatagaaattttccaatatgtttgtccatgccattgaagtattgcatcagaagaagttattgtca 32761090  T
Q  111 gcttgtaatttcctgttgacaaatttgaattcgatgaagcactcgacaatgatgctccaaccgataatcgttgtccaataacgattgtatcggttggatg 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32761089 gcttgtaatttcctgttgacaaatttgaattcgatgaagcactcgacaatgatgctccaaccgataatcgttgtccaataacgattgtatcggttggatg 32760990  T
Q  211 ttgaaaactctcccaaagagaaccattggattgatcaagtaacacaaggtttcccatctcagtgagtgaaagtttttgtacttgtgatttaagtggtggt 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32760989 ttgaaaactctcccaaagagaaccattggattgatcaagtaacacaaggtttcccatctcagtgagtgaaagtttttgtacttgtgatttaagtggtggt 32760890  T
Q  311 gttgaccatttagaatttccatttttgtcaaaaattgtaatcccttcgacagttagcttcactgtatcggaatctgagatgggcgcgtcgcggttagcag 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||    
T  32760889 gttgaccatttagaatttccatttttgtcaaaaattgtaatcccttcgacagttagcttcactgtatcggaatctgagatgggcgcgt---ggttagcag 32760793  T
Q  411 accaaatgaccgtgtttgacgcggcatgtatgatgcatagatagaaacttgtttgttgattaccaggattgaatatagctgccttgaatgttttgtttct 510  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32760792 accaaatgaccgtgtttgacgcggcatgtatgatgcatagatagaaacttgtttgttgattaccaggattgaatatagctgccttgaatgttttgtttct 32760693  T
Q  511 agacaacaaaaatgttccggtgttagcgatgaattgaagatacgaagcagtgaaattcggtgagatatgatctgaaaatgtgtaagcggatatggaagta 610  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32760692 agacaacaaaaatgttccagtgttagcgatgaattgaagatacgaagcagtgaaattcggtgagatatgatctgaaaatgtgtaagcggatatggaagta 32760593  T
Q  611 gtaaacaaaaggaaaatagtggaagaaaaatttatgattagtttc 655  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  32760592 gtaaacaaaaggaaaatagtggaagaaaaatttatgattagtttc 32760548  T

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