View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16136_low_2 (Length: 423)
Name: NF16136_low_2
Description: NF16136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16136_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 7 - 407
Target Start/End: Original strand, 8889824 - 8890224
Alignment:
| Q |
7 |
tccaagaatattcagctttgatgggaatgaagcagcccatagcaactgcctaggagtcctaaaactgctgtcatttacagctctaaatcctaagtgtagc |
106 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
8889824 |
tccaaaaatattcagctttgatgggaatgaagcagcccatagcaactgccttgcagtcctaaaactgctgtcatttacagctctaaatcctcagtgtagc |
8889923 |
T |
|
| Q |
107 |
agcagcttgtaacaagactaaactgtaaatttactgacctatcatgtagccatttcagggtctaattcatcaacctttggggctgcttgatttaatagtg |
206 |
Q |
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| T |
8889924 |
agcagcttgtaacaagactaaactgtaaatttactgacctatcatgtagccatttcagggtctaattcatcaacctttggggctgcttgatttaatagtg |
8890023 |
T |
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| Q |
207 |
cttctaattcagattcacaatccagttctgcaatgtttaattctttatcatttatccaaaatcccagtgtctttatttggaatgtagaaagctcttcaaa |
306 |
Q |
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| T |
8890024 |
cttctaattcagattcacaatccagttctgcaatgtttaattctttatcatttatccaaaatcccagtgcctttatttggaatgtagaaagctcttcaaa |
8890123 |
T |
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| Q |
307 |
ttaattttttaagttgtaattaattgttctacttcacaaacaatggagtagcgctctttaaattatttgaagttataattatagctcatgaaggtctttt |
406 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
8890124 |
ttaattttttaagtcgtaattaattgttctacttcacaaacaatggagtagtgctctttaaattatttgaagttatacttatagctcatgaaggtctttt |
8890223 |
T |
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| Q |
407 |
t |
407 |
Q |
| |
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| T |
8890224 |
t |
8890224 |
T |
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Back To:
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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 79
Target Start/End: Original strand, 4325359 - 4325431
Alignment:
| Q |
7 |
tccaagaatattcagctttgatgggaatgaagcagcccatagcaactgcctaggagtcctaaaactgctgtca |
79 |
Q |
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||||| |||||||| |||||||||| |||| ||||||| |||| ||||| | | ||||||||||||| ||||| |
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| T |
4325359 |
tccaaaaatattcacctttgatgggcatgaggcagcccgtagccactgcattgcagtcctaaaactgttgtca |
4325431 |
T |
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