View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16136_low_3 (Length: 299)
Name: NF16136_low_3
Description: NF16136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16136_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 16 - 280
Target Start/End: Original strand, 44814521 - 44814785
Alignment:
| Q |
16 |
atatagtccacagctcagtgcatgaaacttattccttggaatcaactcatccacatcttatgaaacaattgaatattgaaggggataaaagttccaaaac |
115 |
Q |
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| T |
44814521 |
atatagtccacagctcagtgcatgaaacttattccttggaatcaactcatccacatcttatgaaacaattgaatattgaaggggataaaagttccaaaac |
44814620 |
T |
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| Q |
116 |
atgacctattttactcttcctccgcaattacactaatatcacccttttccagcaaatcatgaaaggtcctggtttttctttgctcattccagtgatgcat |
215 |
Q |
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| T |
44814621 |
atgacctattttattcttcctccgcaattacgctaatctcacccttttccagcaaatcatgaaaggtcctggtttttctttgctcattccagtgatgcat |
44814720 |
T |
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| Q |
216 |
cttccaaacactgccagcagctaatccgagtactatgccaatacatatttccttcacgacgcttg |
280 |
Q |
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| T |
44814721 |
cttccaaacactgccagcagctaatccgagtactatgccaatacatatttccttcacgacgcttg |
44814785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 123 - 239
Target Start/End: Complemental strand, 38956864 - 38956748
Alignment:
| Q |
123 |
attttactcttcctccgcaattacactaatatcacccttttccagcaaatcatgaaaggtcctggtttttctttgctcattccagtgatgcatcttccaa |
222 |
Q |
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|||||||||||| || ||| |||||||| ||||||||||| || ||||| | |||||||||||||||||| || |||||||| |||||||||||||| |
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| T |
38956864 |
attttactcttcatctacaacaacactaatctcacccttttcgagtaaatcgtaaaaggtcctggtttttctctgttcattccaatgatgcatcttccat |
38956765 |
T |
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| Q |
223 |
acactgccagcagctaa |
239 |
Q |
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|||| |||||| |||| |
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| T |
38956764 |
acaccaccagcaactaa |
38956748 |
T |
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