View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16137_high_1 (Length: 620)
Name: NF16137_high_1
Description: NF16137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16137_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 530; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 1 - 595
Target Start/End: Original strand, 44489711 - 44490296
Alignment:
| Q |
1 |
agtttcattagtatttttgagtgcaacataattggattttgataagtattgggaggtgagttgggagagaaataaacaatctttgagagcatttattgcc |
100 |
Q |
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| T |
44489711 |
agtttcattagtatttttgagtgcaacataattggattttgataagtattgtgaggtgagttgggagagaaataaacaatctttgagagcatttattgtc |
44489810 |
T |
|
| Q |
101 |
tctttggtaaaagtagactcaagatagaagttcaatgagttcaaaaacttttgggactgaaacatggatttttgaattgagaatctagcaaagtcatgga |
200 |
Q |
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| T |
44489811 |
tctttggtaaaagtagactcaagatagaagttcaatgagttcaaaaatttttgggactgaaacatggatttttgaattgagaatctagcaaagtcatgga |
44489910 |
T |
|
| Q |
201 |
ctttggcattttgttttggaagtagatttgtgcaataagatggatattgggatgatttacaaatggtttctggaggtacaagagtgtcatttgcggtagc |
300 |
Q |
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| T |
44489911 |
ctttggcattttgttttggaagtagatttgtgcaataagatggatattgggatgatttacaaatggtttctggaggtacaagggtgtcatttgcggtagc |
44490010 |
T |
|
| Q |
301 |
tagaaatgcaaagaatggaaggagaaagaaaattgagaatgtagtagcaatagagaaggctttccaacccattgttataaaggacatgcaatattgcaat |
400 |
Q |
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| T |
44490011 |
tagaaatgcaaagaatggaaggagaaagaaaattgagaatgtagtagcaatagagaaggctttccaacccattgttataaaggacatgcaatattgcaat |
44490110 |
T |
|
| Q |
401 |
atagaaagagagctagctagatttcaaaatttatatatgtagtggttggttggggtttgtgttggatttgagttcaattcgtgcaacacatgactatagt |
500 |
Q |
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| T |
44490111 |
atagaaagagagctatctagatttcaaattttatatatgtagtggttggttggggtttgtgttggatttgagttcaattcgtgcaacacatgac-----t |
44490205 |
T |
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| Q |
501 |
ataggtgattctattatggtgaatatttttggttgtgtcatcacgtcgactagccagcagttagttatcactatatttgttagcttgattgatat |
595 |
Q |
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| T |
44490206 |
ataggtgattctattatggtgaatttttttggttgtgtcatcacgtcgactagccagc----agttatcactatatttgttagcttgattgatat |
44490296 |
T |
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