View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16137_high_2 (Length: 392)
Name: NF16137_high_2
Description: NF16137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16137_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 16 - 376
Target Start/End: Complemental strand, 9866350 - 9866001
Alignment:
| Q |
16 |
ataaggggcacataatgaatttaagggtttccataattaatgtttgtaaggtgactagaagaacatatacatttatagcaaaataataatgataattatg |
115 |
Q |
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| T |
9866350 |
ataaggggcacataatgaatttaagggtttccataattaatgtttgtaaggtgactagaagaacatatacatttatagcaaaatgataatgatatttatg |
9866251 |
T |
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| Q |
116 |
tgaaaaatattgtaggtttaatataatttttataaccaaccgacatcagtcttaacaagcatgagtaataataatgtaccaaaaaagcatgagtaatact |
215 |
Q |
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| T |
9866250 |
tgaaaaatattgtaggtttaatataattttt-taaccaaccgacatcagtcttaacaagcatgag---taataatgtaccaaaaaagcatgagtaatact |
9866155 |
T |
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| Q |
216 |
tggcttnnnnnnnnnnnnnnnnnnntcatggtatggcatcacctcgtgaaattgttcaaataggtaggaagcctcctttaccgggatgggttaagttgaa |
315 |
Q |
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| T |
9866154 |
tggcttaaaaaaaaaaggc-------catggtatggcgtcacctcgtgaaattgttcaaataggtaggaagcctcctttaccgggatgggttaagttgaa |
9866062 |
T |
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| Q |
316 |
tacggataattcttatagaggtaatgggttacccgattgtggtggtgttaaccgtggaagt |
376 |
Q |
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| T |
9866061 |
tacggataattcttatagaggtaatgggttacccggttgtggtggtgttaaccgtggaagt |
9866001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 247 - 376
Target Start/End: Complemental strand, 4065163 - 4065034
Alignment:
| Q |
247 |
tatggcatcacctcgtgaaattgttcaaataggtaggaagcctcctttaccgggatgggttaagttgaatacggataattcttatagaggtaatgggtta |
346 |
Q |
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| T |
4065163 |
tatggcgtcacctcgtgaaattgttcaaagtggttggaagcctcttttagagggacgagttaagttgaatacggatgactgttgtagagataatgggtta |
4065064 |
T |
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| Q |
347 |
cccgattgtggtggtgttaaccgtggaagt |
376 |
Q |
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| T |
4065063 |
gctggttgtggtggttttatccgtagaagt |
4065034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 250 - 318
Target Start/End: Complemental strand, 24184874 - 24184804
Alignment:
| Q |
250 |
ggcatcacctcgtgaaattgttcaaataggtaggaagcctcctttaccggg--atgggttaagttgaatac |
318 |
Q |
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| T |
24184874 |
ggcatcaccttgtgaaattgttcaaattggttggaagcctcctttagagggatataggttaagttgaatac |
24184804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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