View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16137_low_1 (Length: 783)

Name: NF16137_low_1
Description: NF16137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16137_low_1
NF16137_low_1
[»] chr5 (6 HSPs)
chr5 (411-583)||(11336209-11336381)
chr5 (1-238)||(11335677-11335917)
chr5 (242-400)||(11335995-11336153)
chr5 (478-583)||(43379448-43379553)
chr5 (736-783)||(11339290-11339337)
chr5 (478-583)||(43378572-43378677)
[»] chr6 (4 HSPs)
chr6 (544-583)||(13208225-13208264)
chr6 (523-581)||(3163534-3163592)
chr6 (424-466)||(10740746-10740788)
chr6 (478-583)||(13207346-13207451)
[»] chr2 (3 HSPs)
chr2 (530-577)||(3466658-3466705)
chr2 (411-476)||(8985740-8985805)
chr2 (530-583)||(39062863-39062916)
[»] chr8 (1 HSPs)
chr8 (492-558)||(3582072-3582138)
[»] chr7 (2 HSPs)
chr7 (530-583)||(35752377-35752430)
chr7 (411-476)||(46964298-46964363)
[»] chr4 (1 HSPs)
chr4 (411-476)||(16869676-16869741)


Alignment Details
Target: chr5 (Bit Score: 145; Significance: 7e-76; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 145; E-Value: 7e-76
Query Start/End: Original strand, 411 - 583
Target Start/End: Original strand, 11336209 - 11336381
Alignment:
Q  411 gaagcgacgagtaattcaagaagaatcaaaccatgctcttgataccatgtaaacaacacaaatatacgagttcatctttcttccattcaggaagcctcca 510  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  11336209 gaagcgacgagtaatttaagaagaatcaaaccatgctcttgataccatgtaaacaacacaaatacacgagttcatctttcttccatttaggaagcctcca 11336308  T
Q  511 tttttcccggtccagtttttagatgtatgacatgtgacaaacataaaagcaagggttaggattaaaaggtttg 583  Q
    |||| |||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  11336309 ttttccccggtccagcttttaggtgtgtgacatgtgacaaacataaaagcaagggttaggattaaaaggtttg 11336381  T

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Target: chr5; HSP #2
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 11335677 - 11335917
Alignment:
Q  1 accaattaaccaaacacaaacacataaacacacgaagactnnnnnnnctcacaaacggattactagactcaagtaaataaaccnnnnnnnggagatcagc 100  Q
    |||||||||||||||||||| ||| |||||||||||||||       |||||||||||||||||||||||| |||||||||||       ||||||| ||    
T  11335677 accaattaaccaaacacaaatacagaaacacacgaagactaaaaaaactcacaaacggattactagactcacgtaaataaaccaaaaaaaggagatcggc 11335776  T
Q  101 ccaaacataaaactcaagcaaaaagaaccaccaaccttgattaaattaaaagaataatgaa---aaggagaataatcggatgcaaatctgactccaaaat 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||   ||| ||||||||||| ||||| |||||||||||||     
T  11335777 ccaaacataaaactcaagcaaaaagaaccaccaaccttgattaaattaaaagaacaatgaaaagaagaagaataatcggctgcaagtctgactccaaaac 11335876  T
Q  198 ccacaaacaaaatatgattcctctatatattcccaattatg 238  Q
    ||||||||||||| | ||||||| |||||||||||||||||    
T  11335877 ccacaaacaaaatctaattcctccatatattcccaattatg 11335917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 242 - 400
Target Start/End: Original strand, 11335995 - 11336153
Alignment:
Q  242 aatccaaatgtagccataaaagcaaacaacnnnnnnnggcaatttcaaatccaccaacatcagtgtttcaacaaagagtcaatcggagtcaaataannnn 341  Q
    ||||||||||||||||||||||||||||||       |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||        
T  11335995 aatccaaatgtagccataaaagcaaacaacacaaaaaggcaatttcaaatccaccaacaacattgtttcaacaaagagtcaatcggagtcaaataatttt 11336094  T
Q  342 nnnagcgacgaatgcacaataaccaacaaatacaatcagtcttcaatcaagataaagat 400  Q
       ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  11336095 tttagcgacgaatgcacaataaccaacaaatataatcagtcttcaatcaaaataaagat 11336153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 478 - 583
Target Start/End: Complemental strand, 43379553 - 43379448
Alignment:
Q  478 gagttcatctttcttccattcaggaagcctccatttttcccggtccagtttttagatgtatgacatgtgacaaacataaaagcaagggttaggattaaaa 577  Q
    ||||||||||||  |||||| | |||| |||||||| ||||  ||||| | |||||||| ||||||||| |||| ||||||||||||||| |||||||||    
T  43379553 gagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtggcaaaaataaaagcaagggttgggattaaaa 43379454  T
Q  578 ggtttg 583  Q
    ||||||    
T  43379453 ggtttg 43379448  T

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Target: chr5; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 736 - 783
Target Start/End: Original strand, 11339290 - 11339337
Alignment:
Q  736 attggccattctgctcgacatcacctcacccaaatcactctaagtcaa 783  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  11339290 attggccattctgctcgacatcacctcacccaaatcactctaagtcaa 11339337  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 478 - 583
Target Start/End: Original strand, 43378572 - 43378677
Alignment:
Q  478 gagttcatctttcttccattcaggaagcctccatttttcccggtccagtttttagatgtatgacatgtgacaaacataaaagcaagggttaggattaaaa 577  Q
    ||||||||||||  |||||| | |||| ||||||||  |||  || || | |||||||| ||||| ||| |||| |||||||||||||||  ||||||||    
T  43378572 gagttcatctttgctccatttatgaaggctccatttaccccattctagctcttagatgtgtgacacgtggcaaaaataaaagcaagggttgagattaaaa 43378671  T
Q  578 ggtttg 583  Q
    ||||||    
T  43378672 ggtttg 43378677  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 544 - 583
Target Start/End: Complemental strand, 13208264 - 13208225
Alignment:
Q  544 gtgacaaacataaaagcaagggttaggattaaaaggtttg 583  Q
    |||||||| ||||||||||||||| |||||||||||||||    
T  13208264 gtgacaaaaataaaagcaagggttgggattaaaaggtttg 13208225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 523 - 581
Target Start/End: Original strand, 3163534 - 3163592
Alignment:
Q  523 cagtttttagatgtatgacatgtgacaaacataaaagcaagggttaggattaaaaggtt 581  Q
    |||||| |||||||  |||||||| |||| |||||| ||||||||||||| ||||||||    
T  3163534 cagtttatagatgtgcgacatgtgtcaaaaataaaaccaagggttaggatcaaaaggtt 3163592  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 424 - 466
Target Start/End: Complemental strand, 10740788 - 10740746
Alignment:
Q  424 attcaagaagaatcaaaccatgctcttgataccatgtaaacaa 466  Q
    ||||||| || |||||||||||||||||||||||||| |||||    
T  10740788 attcaaggaggatcaaaccatgctcttgataccatgttaacaa 10740746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 478 - 583
Target Start/End: Original strand, 13207346 - 13207451
Alignment:
Q  478 gagttcatctttcttccattcaggaagcctccatttttcccggtccagtttttagatgtatgacatgtgacaaacataaaagcaagggttaggattaaaa 577  Q
    ||||||||||||  |||||| | |||| || |||||  |||  ||||| | |||||||| ||||| ||| |||| |||||||||||||||  ||||||||    
T  13207346 gagttcatctttactccatttacgaaggctacatttaccccattccagctcttagatgtgtgacacgtggcaaaaataaaagcaagggttgagattaaaa 13207445  T
Q  578 ggtttg 583  Q
    | ||||    
T  13207446 gatttg 13207451  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 530 - 577
Target Start/End: Original strand, 3466658 - 3466705
Alignment:
Q  530 tagatgtatgacatgtgacaaacataaaagcaagggttaggattaaaa 577  Q
    ||||||| |||||| ||||||| |||||| ||||||||||||||||||    
T  3466658 tagatgtgtgacatatgacaaaaataaaatcaagggttaggattaaaa 3466705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 411 - 476
Target Start/End: Complemental strand, 8985805 - 8985740
Alignment:
Q  411 gaagcgacgagtaattcaagaagaatcaaaccatgctcttgataccatgtaaacaacacaaatata 476  Q
    |||||||||| ||| ||||| ||  |||||||| |||||||||||||||| ||||| ||| |||||    
T  8985805 gaagcgacgactaaatcaaggagggtcaaaccacgctcttgataccatgttaacaatacagatata 8985740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 530 - 583
Target Start/End: Complemental strand, 39062916 - 39062863
Alignment:
Q  530 tagatgtatgacatgtgacaaacataaaagcaagggttaggattaaaaggtttg 583  Q
    ||||||||||||||||| |||  |||||| ||| || |||||||||||||||||    
T  39062916 tagatgtatgacatgtggcaacaataaaatcaatggctaggattaaaaggtttg 39062863  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 492 - 558
Target Start/End: Complemental strand, 3582138 - 3582072
Alignment:
Q  492 tccattcaggaagcctccatttttcccggtccagtttttagatgtatgacatgtgacaaacataaaa 558  Q
    |||||| |||||||||| |||| |||  ||| | |||||||||||||||||||||| ||| ||||||    
T  3582138 tccatttaggaagcctctatttatccatgtctattttttagatgtatgacatgtgagaaaaataaaa 3582072  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 530 - 583
Target Start/End: Original strand, 35752377 - 35752430
Alignment:
Q  530 tagatgtatgacatgtgacaaacataaaagcaagggttaggattaaaaggtttg 583  Q
    ||||||||||||||||| |||| |||||| ||| ||||  ||||||||||||||    
T  35752377 tagatgtatgacatgtggcaaaaataaaatcaatggttgtgattaaaaggtttg 35752430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 411 - 476
Target Start/End: Original strand, 46964298 - 46964363
Alignment:
Q  411 gaagcgacgagtaattcaagaagaatcaaaccatgctcttgataccatgtaaacaacacaaatata 476  Q
    |||||||||| ||| ||||| ||  |||||||| |||||||||||||||| ||||| ||| |||||    
T  46964298 gaagcgacgactaaatcaaggagggtcaaaccacgctcttgataccatgttaacaatacagatata 46964363  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 411 - 476
Target Start/End: Complemental strand, 16869741 - 16869676
Alignment:
Q  411 gaagcgacgagtaattcaagaagaatcaaaccatgctcttgataccatgtaaacaacacaaatata 476  Q
    |||||||||| ||| ||||| ||  |||||||| |||||||||||||||| ||||| ||| |||||    
T  16869741 gaagcgacgactaaatcaaggagggtcaaaccacgctcttgataccatgttaacaatacagatata 16869676  T

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