View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16137_low_4 (Length: 249)

Name: NF16137_low_4
Description: NF16137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16137_low_4
NF16137_low_4
[»] chr5 (1 HSPs)
chr5 (4-244)||(5256130-5256368)
[»] chr4 (3 HSPs)
chr4 (4-243)||(54435216-54435453)
chr4 (23-93)||(16605693-16605760)
chr4 (5-45)||(39538153-39538193)
[»] chr2 (3 HSPs)
chr2 (58-169)||(25893412-25893523)
chr2 (58-134)||(6573664-6573740)
chr2 (23-83)||(10840567-10840624)
[»] chr3 (2 HSPs)
chr3 (23-93)||(33156264-33156331)
chr3 (23-104)||(9367832-9367910)
[»] scaffold0347 (1 HSPs)
scaffold0347 (23-113)||(14515-14602)
[»] chr8 (1 HSPs)
chr8 (23-81)||(4405942-4405997)
[»] chr1 (4 HSPs)
chr1 (23-93)||(4960631-4960698)
chr1 (58-93)||(44523406-44523441)
chr1 (4-45)||(17691291-17691332)
chr1 (23-81)||(17662132-17662187)
[»] scaffold0220 (1 HSPs)
scaffold0220 (58-105)||(23354-23401)
[»] chr7 (4 HSPs)
chr7 (57-88)||(11397500-11397531)
chr7 (23-93)||(23181264-23181331)
chr7 (23-93)||(45915750-45915817)
chr7 (4-44)||(33808395-33808435)
[»] chr6 (2 HSPs)
chr6 (60-110)||(140993-141043)
chr6 (60-110)||(149014-149064)


Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 4 - 244
Target Start/End: Complemental strand, 5256368 - 5256130
Alignment:
Q  4 caaattagtcttacatttgttaatcatttaaaatttcgtcccacttcctcctcattaatcactgtcacgtcactaattagctgacgtggcgctgttaatt 103  Q
    |||||||| ||||||||||||||||||||||||||||||||||| |||||   ||||||||| |||||||||||||||||||||||||||||| ||||||    
T  5256368 caaattagccttacatttgttaatcatttaaaatttcgtcccacatcctc---attaatcaccgtcacgtcactaattagctgacgtggcgctattaatt 5256272  T
Q  104 ggtcaaatgattgtttgactcaacaaaagttgatgcgaactgacaaaaatacccctgacttctcagacaattgcgaaaggaccaatg-aaaatgaccaaa 202  Q
    ||||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  5256271 ggtcaaatgattgtttgactcagaaaaagttgatgcgaacggacaaaaatacccctgacttctcagacaattgcgaaaggaccaatgaaaaatgaccaaa 5256172  T
Q  203 ctacccctctcttcttcttctcaaaatcttcttccctttgct 244  Q
    || |||||||||||||||||||||||||||||||||||||||    
T  5256171 ctgcccctctcttcttcttctcaaaatcttcttccctttgct 5256130  T

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Target: chr4 (Bit Score: 143; Significance: 3e-75; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 4 - 243
Target Start/End: Complemental strand, 54435453 - 54435216
Alignment:
Q  4 caaattagtcttacatttgttaatcatttaaaatttcgtcccacttcctcctcattaatcactgtcacgtcactaattagctgacgtggcgctgttaatt 103  Q
    ||||||||  || |||||| |||| ||||||||||||||||| ||||| |||   ||||||||  ||| |||||||||||||||||| || |||||||||    
T  54435453 caaattagcattgcatttgataattatttaaaatttcgtccctcttccccct---taatcactaacacatcactaattagctgacgtcgcactgttaatt 54435357  T
Q  104 ggtcaaatgattgtttgactcaacaaaagttgatgcgaactgacaaaaatacccctgacttctcagacaattgcgaaaggaccaatg-aaaatgaccaaa 202  Q
    |||||||||||||||||||||| ||||||||| ||||||| |||||||||| |||| |||||||||||||||||||||||| ||||| ||||||||||||    
T  54435356 ggtcaaatgattgtttgactcagcaaaagttgctgcgaaccgacaaaaatagccctaacttctcagacaattgcgaaaggagcaatgaaaaatgaccaaa 54435257  T
Q  203 ctacccctctcttcttcttctcaaaatcttcttccctttgc 243  Q
    || ||||||||||||||||||||||||||||||||||||||    
T  54435256 ctgcccctctcttcttcttctcaaaatcttcttccctttgc 54435216  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 93
Target Start/End: Original strand, 16605693 - 16605760
Alignment:
Q  23 ttaatcatttaaaatttcgtcccacttcctcctcattaatcactgtcacgtcactaattagctgacgtggc 93  Q
    |||||||||||||||||||||||   ||| ||   |||||||||| |||||||||||||||||||||||||    
T  16605693 ttaatcatttaaaatttcgtccc---tccccccacttaatcactgccacgtcactaattagctgacgtggc 16605760  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 39538153 - 39538193
Alignment:
Q  5 aaattagtcttacatttgttaatcatttaaaatttcgtccc 45  Q
    ||||||||||| ||||  |||||||||||||||||||||||    
T  39538153 aaattagtcttgcattctttaatcatttaaaatttcgtccc 39538193  T

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Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 58 - 169
Target Start/End: Complemental strand, 25893523 - 25893412
Alignment:
Q  58 ttaatcactgtcacgtcactaattagctgacgtggcgctgttaattggtcaaatgattgtttgactcaacaaaagttgatgcgaactgacaaaaataccc 157  Q
    |||||||||| |||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||  ||||| ||||||||||||||||||||||||     
T  25893523 ttaatcactgccacgtccctaattagctgacgtggcgctgttaattagtcaaatgactgtttgactcggcaaaaattgatgcgaactgacaaaaatacca 25893424  T
Q  158 ctgacttctcag 169  Q
    ||||||||||||    
T  25893423 ctgacttctcag 25893412  T

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Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 58 - 134
Target Start/End: Original strand, 6573664 - 6573740
Alignment:
Q  58 ttaatcactgtcacgtcactaattagctgacgtggcgctgttaattggtcaaatgattgtttgactcaacaaaagtt 134  Q
    |||||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  6573664 ttaatcactgccacgtccctaattagctgacgtggcgctgttaattggtcaaatgactgtttgactcagcaaaagtt 6573740  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 83
Target Start/End: Original strand, 10840567 - 10840624
Alignment:
Q  23 ttaatcatttaaaatttcgtcccacttcctcctcattaatcactgtcacgtcactaattag 83  Q
    ||||||||||||| ||||||||| |||||  |   ||||||||||||||||||||||||||    
T  10840567 ttaatcatttaaactttcgtccctcttcccac---ttaatcactgtcacgtcactaattag 10840624  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 93
Target Start/End: Complemental strand, 33156331 - 33156264
Alignment:
Q  23 ttaatcatttaaaatttcgtcccacttcctcctcattaatcactgtcacgtcactaattagctgacgtggc 93  Q
    |||||||||||||||||||||||   ||| ||   |||||||||| |||||||||||||||||||||||||    
T  33156331 ttaatcatttaaaatttcgtccc---tccccccacttaatcactgccacgtcactaattagctgacgtggc 33156264  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 104
Target Start/End: Original strand, 9367832 - 9367910
Alignment:
Q  23 ttaatcatttaaaatttcgtcccacttcctcctcattaatcactgtcacgtcactaattagctgacgtggcgctgttaattg 104  Q
    |||||||||||||||||||||||   || |||  ||||||||||| ||||||||||||| | ||| |||||  |||||||||    
T  9367832 ttaatcatttaaaatttcgtccc---tcatcccaattaatcactgccacgtcactaatttgatgaggtggcattgttaattg 9367910  T

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Target: scaffold0347 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0347
Description:

Target: scaffold0347; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 113
Target Start/End: Complemental strand, 14602 - 14515
Alignment:
Q  23 ttaatcatttaaaatttcgtcccacttcctcctcattaatcactgtcacgtcactaattagctgacgtggcgctgttaattggtcaaatga 113  Q
    |||||||||||| |||||||||| || ||  ||   ||||||||| ||| ||||| ||||||||||||||| ||||| |||||| ||||||    
T  14602 ttaatcatttaagatttcgtccctctccccact---taatcactgccacatcactgattagctgacgtggctctgtttattggttaaatga 14515  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 81
Target Start/End: Complemental strand, 4405997 - 4405942
Alignment:
Q  23 ttaatcatttaaaatttcgtcccacttcctcctcattaatcactgtcacgtcactaatt 81  Q
    ||||||||||||||||||||||| |||||  |   ||||||||||||||||||||||||    
T  4405997 ttaatcatttaaaatttcgtccctcttcccac---ttaatcactgtcacgtcactaatt 4405942  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 93
Target Start/End: Original strand, 4960631 - 4960698
Alignment:
Q  23 ttaatcatttaaaatttcgtcccacttcctcctcattaatcactgtcacgtcactaattagctgacgtggc 93  Q
    ||||||||||||||||||||||| |||||  |   |||||||||| ||||||||||||| | |||||||||    
T  4960631 ttaatcatttaaaatttcgtccctcttcccac---ttaatcactgccacgtcactaatttgatgacgtggc 4960698  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 93
Target Start/End: Complemental strand, 44523441 - 44523406
Alignment:
Q  58 ttaatcactgtcacgtcactaattagctgacgtggc 93  Q
    |||||||||| |||||||||||||||||||||||||    
T  44523441 ttaatcactgccacgtcactaattagctgacgtggc 44523406  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 45
Target Start/End: Original strand, 17691291 - 17691332
Alignment:
Q  4 caaattagtcttacatttgttaatcatttaaaatttcgtccc 45  Q
    |||||||||||| ||||  |||||||||||||||||||||||    
T  17691291 caaattagtcttgcattgtttaatcatttaaaatttcgtccc 17691332  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 81
Target Start/End: Complemental strand, 17662187 - 17662132
Alignment:
Q  23 ttaatcatttaaaatttcgtcccacttcctcctcattaatcactgtcacgtcactaatt 81  Q
    ||||||||||||||||||||||| |||||  |   |||||||||| |||||||||||||    
T  17662187 ttaatcatttaaaatttcgtccctcttcccac---ttaatcactgccacgtcactaatt 17662132  T

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Target: scaffold0220 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 105
Target Start/End: Original strand, 23354 - 23401
Alignment:
Q  58 ttaatcactgtcacgtcactaattagctgacgtggcgctgttaattgg 105  Q
    |||||||||| ||||||| ||||| ||||||||||| |||||||||||    
T  23354 ttaatcactgccacgtcagtaatttgctgacgtggctctgttaattgg 23401  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 88
Target Start/End: Original strand, 11397500 - 11397531
Alignment:
Q  57 attaatcactgtcacgtcactaattagctgac 88  Q
    ||||||||||||||||||||||||||||||||    
T  11397500 attaatcactgtcacgtcactaattagctgac 11397531  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 93
Target Start/End: Complemental strand, 23181331 - 23181264
Alignment:
Q  23 ttaatcatttaaaatttcgtcccacttcctcctcattaatcactgtcacgtcactaattagctgacgtggc 93  Q
    ||||||||||||||||||||||| ||  |||| | ||||||||||||| |||||||||| | |||||||||    
T  23181331 ttaatcatttaaaatttcgtccctct--ctccac-ttaatcactgtcatgtcactaatttgatgacgtggc 23181264  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 93
Target Start/End: Complemental strand, 45915817 - 45915750
Alignment:
Q  23 ttaatcatttaaaatttcgtcccacttcctcctcattaatcactgtcacgtcactaattagctgacgtggc 93  Q
    |||||||||||||||| |||||| |||  |||  ||||||||||| ||||||||| |||||||||||||||    
T  45915817 ttaatcatttaaaattccgtccctctt--tccg-attaatcactgccacgtcactgattagctgacgtggc 45915750  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 33808395 - 33808435
Alignment:
Q  4 caaattagtcttacatttgttaatcatttaaaatttcgtcc 44  Q
    |||||||||||| ||||  ||||||||||||||||||||||    
T  33808395 caaattagtcttgcattctttaatcatttaaaatttcgtcc 33808435  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 110
Target Start/End: Complemental strand, 141043 - 140993
Alignment:
Q  60 aatcactgtcacgtcactaattagctgacgtggcgctgttaattggtcaaa 110  Q
    |||||||||||||||||| |||||||||||| || || |||||||| ||||    
T  141043 aatcactgtcacgtcactgattagctgacgttgcactattaattggccaaa 140993  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 110
Target Start/End: Complemental strand, 149064 - 149014
Alignment:
Q  60 aatcactgtcacgtcactaattagctgacgtggcgctgttaattggtcaaa 110  Q
    |||||||||||||||||| |||||||||||| || || |||||||| ||||    
T  149064 aatcactgtcacgtcactgattagctgacgttgcactattaattggccaaa 149014  T

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