View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16138_high_1 (Length: 456)
Name: NF16138_high_1
Description: NF16138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16138_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 5 - 448
Target Start/End: Complemental strand, 41896399 - 41895956
Alignment:
| Q |
5 |
cagaaccctcttgattattaatcccttgtaaaccaccataaccattctcaaacccttctaagccaaaattgaccccaagcttaaaatcttgcaaagcaaa |
104 |
Q |
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| T |
41896399 |
cagaaccctcttgattattaatcccttgtaaaccaccataaccattctcaaacccttctaagccaaaattgaccccaagcttaaaatcttgcaaagcaaa |
41896300 |
T |
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| Q |
105 |
gccacttgaattatacattgcactagactcagacaaagtcataggcataaaagaattcaaaccccttgatgaagaagcagttttcagaagctccatagca |
204 |
Q |
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| T |
41896299 |
gccacttgaattatacattgcactagactcagacaaagtcataggcataaaagaattcaaaccccttgatgaagaagcagttttcagaagctccatagca |
41896200 |
T |
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| Q |
205 |
cttgtagttttgtcttgatgatcagttgtgtaaggaagctcaatgaatttagatatggtgttataattatcctcagttgtttgtggtggataagctaggt |
304 |
Q |
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| T |
41896199 |
cttgtagttttgtcttgatgatcagttgtgtaaggaagctcaatgaatttagatatggtgttataattatcctcagttgtttgtggtggataagctaggt |
41896100 |
T |
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| Q |
305 |
taagatcttgtccttgatggatcttagggttttgagaagcagattgagggaaattattttgtgctgtagcaagatcaggattaatgataatattttttgt |
404 |
Q |
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| T |
41896099 |
taagatcttgtccttgatggatcttagggttttgagaagcagattgagggaaattattttgtgttgtagcaagatcaggattaatgataatattttttgt |
41896000 |
T |
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| Q |
405 |
tattgatgatggaggttgtgattgtgagattgaaggtgatgatg |
448 |
Q |
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| T |
41895999 |
tattgatgatggaggttgtgattgtgagattgaaggtgatgatg |
41895956 |
T |
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