View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16138_high_2 (Length: 296)

Name: NF16138_high_2
Description: NF16138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16138_high_2
NF16138_high_2
[»] chr4 (3 HSPs)
chr4 (23-200)||(4704604-4704781)
chr4 (262-296)||(4704508-4704542)
chr4 (123-173)||(4704848-4704898)
[»] chr7 (1 HSPs)
chr7 (135-197)||(25268991-25269053)
[»] chr3 (1 HSPs)
chr3 (132-184)||(25840825-25840877)
[»] chr5 (1 HSPs)
chr5 (135-196)||(30186938-30186999)


Alignment Details
Target: chr4 (Bit Score: 174; Significance: 1e-93; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 23 - 200
Target Start/End: Complemental strand, 4704781 - 4704604
Alignment:
Q  23 cagccaataataattgaacaaaaatcaacattaaaagtttcaaagaaaaaacaaccaaattggttgaaccaatagtaactgaactgaaaatcaatattac 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  4704781 cagccaataataattgaacaaaaatcaacattaaaagtttcaaagaaaaaacaaccaaattggttgaaccaatagtaattgaactgaaaatcaatattac 4704682  T
Q  123 tagtatttgtaattaccaatcatgaccaagaacaaagagagcccaaaacatggttccttgagcagcccaataaagtgg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4704681 tagtatttgtaattaccaatcatgaccaagaacaaagagagcccaaaacatggttccttgagcagcccaataaagtgg 4704604  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 262 - 296
Target Start/End: Complemental strand, 4704542 - 4704508
Alignment:
Q  262 tccctaacaacatagctcatagatttccaaggatc 296  Q
    |||||||||||||||||||||||||||||||||||    
T  4704542 tccctaacaacatagctcatagatttccaaggatc 4704508  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 173
Target Start/End: Complemental strand, 4704898 - 4704848
Alignment:
Q  123 tagtatttgtaattaccaatcatgaccaagaacaaagagagcccaaaacat 173  Q
    ||||||||||||  |||||||||||||||||| ||||| ||| ||||||||    
T  4704898 tagtatttgtaacaaccaatcatgaccaagaataaagatagctcaaaacat 4704848  T

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Target: chr7 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 135 - 197
Target Start/End: Original strand, 25268991 - 25269053
Alignment:
Q  135 ttaccaatcatgaccaagaacaaagagagcccaaaacatggttccttgagcagcccaataaag 197  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  25268991 ttaccaatcatgaccaagaacaaaaagagcccaaaacatggttccttgagcagcccaataaag 25269053  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 132 - 184
Target Start/End: Original strand, 25840825 - 25840877
Alignment:
Q  132 taattaccaatcatgaccaagaacaaagagagcccaaaacatggttccttgag 184  Q
    ||||||||||||||| ||||||||||| |||||||||||||| || |||||||    
T  25840825 taattaccaatcatgtccaagaacaaaaagagcccaaaacattgtcccttgag 25840877  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 196
Target Start/End: Original strand, 30186938 - 30186999
Alignment:
Q  135 ttaccaatcatgaccaagaacaaagagagcccaaaacatggttccttgagcagcccaataaa 196  Q
    |||||||||||| ||||||||||| |  ||||||||||| |||||||||  || ||||||||    
T  30186938 ttaccaatcatgtccaagaacaaaaattgcccaaaacattgttccttgaagaggccaataaa 30186999  T

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