View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16138_low_1 (Length: 1056)
Name: NF16138_low_1
Description: NF16138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16138_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 977; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 977; E-Value: 0
Query Start/End: Original strand, 15 - 1047
Target Start/End: Original strand, 38179679 - 38180711
Alignment:
| Q |
15 |
actacaccatttcactatcttcccattaacattcctctcaagttcctctctacaacttaactcatcgctatcaccctcctcttctttttgttgcataact |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
38179679 |
actacaccatttcactatcttcccattaacattcctctcaagctcctctctacaacttaactcatcactatcaccctcctcttctttttgttgcataact |
38179778 |
T |
|
| Q |
115 |
ttttcatctctaattacccacaagaaataaaatccagaatccaacaacgcacgtccaatttcctccatttgtctcttggacaaaatagcaagagtaccaa |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
38179779 |
ttttcatctctaattacccacaagaaataaaatccagaatccaacaacgcacgtccaatttcctccatttgtctattggacaaaatagcaagagtaccaa |
38179878 |
T |
|
| Q |
215 |
atgaaacataaaccacagacgattcatcctttgaatccaaccattcaaagtaattatcttctgattcaaccccgacaacaccaccaccagacaaagtatc |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||| |
|
|
| T |
38179879 |
atgaaacataaaccacagacgattcatcctttgaatccaaccattcaaagtaattatcttctgattcaacaccgacaacaccaccactagacgaagtatc |
38179978 |
T |
|
| Q |
315 |
attaggatctttaccgcccaagaaagcatatggaatcaatggtccgattggtatcattttgatcttaccaacatcaacggcttttagtgcctctaattca |
414 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
38179979 |
attaggatctttaccgcccaagaaagtatatggaatcaatggtccgattggtatcattttgatcttaccaacgtcaacggcttttagtgcctctaattca |
38180078 |
T |
|
| Q |
415 |
aactcttcaacggtgttaacaagtactttagggttggtttcttcatctagaacttgaatttgttctttgaaagattgagtagcgatagtgtatatatttg |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38180079 |
aactcttcaacggtgttaacaagtactttagggttggtttcttcatatagaacttgaatttgttctttgaaagattgagtagcgatagtgtatatatttg |
38180178 |
T |
|
| Q |
515 |
aagataataaaaaagagggaaggtcacgactttcaagagagaatgacaatcctggtaatgatattgaacatgtttcatcctttgatttgtttgtgatgta |
614 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
38180179 |
aagataataaaaaagagggaaggtcacggctttcaagagagaatgacaatcctggtaatgatattgaacatgtttcatcctttgatttgtttgtgacgta |
38180278 |
T |
|
| Q |
615 |
gtcaccatgctcatgaaagtaataatagtagatatcaaaaaccgttgcagcttgaatccataatagcgctgatgggaggtgaagctcacgtgccaccttt |
714 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38180279 |
gtcaccatgctcatgaaagtaataatagtagatatcaaaaactgttgcagcttgaatccataatagcgctgatgggaggtgaagctcacgtgccaccttt |
38180378 |
T |
|
| Q |
715 |
gcgacccaaggaatgatgataccgtaggctaagcaagtgaatggacgaccttcctgtttgccggagagtatgatatttgtgagaaattccgagcagcggc |
814 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38180379 |
gcgacccaaggaatgatgataccgtaggctaagcaagtgaatggacgaccttcctgtttgccggagagtatgatatttgtgagaaattccgagcagcggc |
38180478 |
T |
|
| Q |
815 |
gcttaagctcatactcgtaggtgacaaagtcttcgttgctttcgaattttgggccatcgtcgtggccgtcagagaaggtggcgaaggaaaggcccgggat |
914 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
38180479 |
gcttaagctcatactcgtaggtgacaaagtcttcgttgctttcgaattttgggccatcgtcgtggccgtcagagaaggtggcgaaggaaaggcccgagat |
38180578 |
T |
|
| Q |
915 |
ggttgatttgttggtaaggcgagtgtgtaagtagatagtggtagcaaaagtgacttgtgcgcccaaagaaatgagacgcttggcgaattggagagcaggg |
1014 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
38180579 |
ggttgatttgttggtaaggcgagtgtgtaagtagatagtggtagcaaaagtgacttgtgcgcccaaagaaatgagacgtttggcgaattggagagcaggg |
38180678 |
T |
|
| Q |
1015 |
tttatgtgaccgtgtagtgggtatgtgatgatg |
1047 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
38180679 |
tttatgtgaccgtgtagtgggtatgtgatgatg |
38180711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 893; E-Value: 0
Query Start/End: Original strand, 15 - 1047
Target Start/End: Original strand, 38184348 - 38185380
Alignment:
| Q |
15 |
actacaccatttcactatcttcccattaacattcctctcaagttcctctctacaacttaactcatcgctatcaccctcctcttctttttgttgcataact |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
38184348 |
actacaccatttcactatcttcccattaacattcctctcaagttcctctctacaacttaactcatcactatcaccctcctcttctttttgttgcataact |
38184447 |
T |
|
| Q |
115 |
ttttcatctctaattacccacaagaaataaaatccagaatccaacaacgcacgtccaatttcctccatttgtctcttggacaaaatagcaagagtaccaa |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38184448 |
ttttcatctctaattacccacaagaaataaaatccagaatccaacaacgcacgtccaatttcctccatttgtctcttggacaaaatagcaagagtaccaa |
38184547 |
T |
|
| Q |
215 |
atgaaacataaaccacagacgattcatcctttgaatccaaccattcaaagtaattatcttctgattcaaccccgacaacaccaccaccagacaaagtatc |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
38184548 |
atgaaacataaaccacagacgattcatcctttgaatccaaccattcaaagtaattatcttctgattcaacatcgacaacaccaccaccagacgaagtatc |
38184647 |
T |
|
| Q |
315 |
attaggatctttaccgcccaagaaagcatatggaatcaatggtccgattggtatcattttgatcttaccaacatcaacggcttttagtgcctctaattca |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38184648 |
attaggatctttaccgcccaagaaagcatatggaatcaatggtccgattggtatcattttgatcttaccaacatcaacggcttttagtgcctctaattca |
38184747 |
T |
|
| Q |
415 |
aactcttcaacggtgttaacaagtactttagggttggtttcttcatctagaacttgaatttgttctttgaaagattgagtagcgatagtgtatatatttg |
514 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
38184748 |
aactcttcaacggtgttaacaagtactgtagggttggtttcttcatctagaacttgaatttgttctttgaaagatcgagtagcgatagtatatatatttg |
38184847 |
T |
|
| Q |
515 |
aagataataaaaaagagggaaggtcacgactttcaagagagaatgacaatcctggtaatgatattgaacatgtttcatcctttgatttgtttgtgatgta |
614 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38184848 |
aagataataaaaaagagggaaggtcacggctttcaagagagaatgacaatcctggtaatgatattgaacatgtttcatcctttgatttgtttgtgatgta |
38184947 |
T |
|
| Q |
615 |
gtcaccatgctcatgaaagtaataatagtagatatcaaaaaccgttgcagcttgaatccataatagcgctgatgggaggtgaagctcacgtgccaccttt |
714 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38184948 |
gtcaccatgttcatgaaagtaataatagtagatatcaaaaaccgttgcagcttgaatccataatagcgctgatgggaggtgaagctcacgtgccaccttt |
38185047 |
T |
|
| Q |
715 |
gcgacccaaggaatgatgataccgtaggctaagcaagtgaatggacgaccttcctgtttgccggagagtatgatatttgtgagaaattccgagcagcggc |
814 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||| |
|
|
| T |
38185048 |
gcgacccaaggaatgatgataccgtaggctaagcaagtgaatggacgaccttcctgtttgccggagagtatgatatttgttagaaattctgagcagtggc |
38185147 |
T |
|
| Q |
815 |
gcttaagctcatactcgtaggtgacaaagtcttcgttgctttcgaattttgggccatcgtcgtggccgtcagagaaggtggcgaaggaaaggcccgggat |
914 |
Q |
| |
|
||||||||| || ||||| || |||||||||||||||||||| ||| || ||||||| ||| |||||||||||||||||||| ||||| ||||| |
|
|
| T |
38185148 |
acttaagctcggacctgtaggcgatgaagtcttcgttgctttcgaaatttttaccgtcgtcgtagccatcagagaaggtggcgaaggagaggcctgggat |
38185247 |
T |
|
| Q |
915 |
ggttgatttgttggtaaggcgagtgtgtaagtagatagtggtagcaaaagtgacttgtgcgcccaaagaaatgagacgcttggcgaattggagagcaggg |
1014 |
Q |
| |
|
||||| ||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
38185248 |
ggttggtttgttgataaggccagtgtgtaagtagatagttgtagcaaaagtgacttgtgcgccgaaagaaatgagacgcttggcgaattggagtgcaggg |
38185347 |
T |
|
| Q |
1015 |
tttatgtgaccgtgtagtgggtatgtgatgatg |
1047 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
38185348 |
tttatgtgaccgtgtagtgggtatgtgatgatg |
38185380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 15 - 1047
Target Start/End: Original strand, 38169865 - 38170897
Alignment:
| Q |
15 |
actacaccatttcactatcttcccattaacattcctctcaagttcctctctacaacttaactcatcgctatcaccctcctcttctttttgttgcataact |
114 |
Q |
| |
|
|||||||||||| |||||||||||||| | ||| |||||||||||||||||||||| | |||||| |||| | || |||||||||||||| | | |
|
|
| T |
38169865 |
actacaccattttactatcttcccattcatattattctcaagttcctctctacaactcagctcatcatcatcaacttcttcttctttttgttgttgtaat |
38169964 |
T |
|
| Q |
115 |
ttttcatctctaattacccacaagaaataaaatccagaatccaacaacgcacgtccaatttcctccatttgtctcttggacaaaatagcaagagtaccaa |
214 |
Q |
| |
|
|||| ||||||||| |||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||| || ||||||| |||||||||||||| |
|
|
| T |
38169965 |
tttttatctctaataacccacaagaaagaaaatccagaatccaacaaggcacgtgcaatttcctccatttgtcttttagacaaaacagcaagagtaccaa |
38170064 |
T |
|
| Q |
215 |
atgaaacataaaccacagacgattcatcctttgaatccaaccattcaaagtaattatcttctgattcaaccccgacaacaccaccaccagacaaagtatc |
314 |
Q |
| |
|
||||||||||||| |||||| ||||||||||||||||||||||| || ||||| ||| | ||| ||||| | |||||| |||||||| || || |||| |
|
|
| T |
38170065 |
atgaaacataaacaacagacttttcatcctttgaatccaaccattgaatgtaatcatcctttgagtcaacacggacaacgtcaccaccaaacgaattatc |
38170164 |
T |
|
| Q |
315 |
attaggatctttaccgcccaagaaagcatatggaatcaatggtccgattggtatcattttgatcttaccaacatcaacggcttttagtgcctctaattca |
414 |
Q |
| |
|
||||||| || || ||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||| || ||||| || | |||| |
|
|
| T |
38170165 |
cgtaggatccttgccatccaagaaagcagatggaatcaacggtccgatgggtatcattttgatcttaccaacatcaactttattcagtgcatccagttca |
38170264 |
T |
|
| Q |
415 |
aactcttcaacggtgttaacaagtactttagggttggtttcttca-tctagaacttgaatttgttctttgaaagattgagtagcgatagtgtatatattt |
513 |
Q |
| |
|
||||| ||||||||||| ||||||||| | |||||| |||||||| || | ||| |||||||| ||||||| |||| || ||| | ||||||| ||||| |
|
|
| T |
38170265 |
aactcctcaacggtgttcacaagtactcttgggttgatttcttcattcaacaac-tgaatttgctctttgagagatggaagagcaaaagtgtatgtattt |
38170363 |
T |
|
| Q |
514 |
gaagataataaaaaagagggaaggtcacgactttcaagagagaatgacaatcctggtaatgatattgaacatgtttcatcctttgatttgtttgtgatgt |
613 |
Q |
| |
|
|||| |||||||||||||||||||| || |||| |||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
38170364 |
gaagccaataaaaaagagggaaggtcgcggcttttaagagagaatgacaatcccggtaatgatattaaacacgtttcatcctttgatttgtttgtgatgt |
38170463 |
T |
|
| Q |
614 |
agtcaccatgctcatgaaagtaataatagtagatatcaaaaaccgttgcagcttgaatccataatagcgctgatgggaggtgaagctcacgtgccacctt |
713 |
Q |
| |
|
||||||| || |||||||||||||||||| | |||||||| |||||||| ||||||||||| || || | ||||||||||||||||||| |||||||||| |
|
|
| T |
38170464 |
agtcaccgtgttcatgaaagtaataatagaatatatcaaacaccgttgctgcttgaatccacaacagtgttgatgggaggtgaagctcatgtgccacctt |
38170563 |
T |
|
| Q |
714 |
tgcgacccaaggaatgatgataccgtaggctaagcaagtgaatggacgaccttcctgtttgccggagagtatgatatttgtgagaaattccgagcagcgg |
813 |
Q |
| |
|
| |||| | || |||| | |||| |||||||||||||||| || ||| |||||| |||||| |||||||||||||||||||| |||| ||| |
|
|
| T |
38170564 |
gggagcccatgaaagtatgagagtgtagattaagcaagtgaatggatgattttcttgtttggaggagagaatgatatttgtgagaaattctgagccgcga |
38170663 |
T |
|
| Q |
814 |
cgcttaagctcatactcgtaggtgacaaagtcttcgttgctttcgaattttgggccatcgtcgtggccgtcagagaaggtggcgaaggaaaggcccggga |
913 |
Q |
| |
|
||| ||| |||| || ||||| ||| | |||||||| || | ||||| | || ||||| | |||||||||||||||||||||||| |||||||||| |
|
|
| T |
38170664 |
cgcgtaaactcagacatgtaggagacgatgtcttcgtcgccaaaggatttttgaccgtcgtcatagccgtcagagaaggtggcgaaggagaggcccggga |
38170763 |
T |
|
| Q |
914 |
tggttgatttgttggtaaggcgagtgtgtaagtagatagtggtagcaaaagtgacttgtgcgcccaaagaaatgagacgcttggcgaattggagagcagg |
1013 |
Q |
| |
|
|||||| ||||||| |||||||| ||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
38170764 |
tggttggtttgttgataaggcgactgtataagtggatagtggtagcaaaagtgacttttgcgcccaaagaaatgagacgcttggtgaattggagggcagg |
38170863 |
T |
|
| Q |
1014 |
gtttatgtgaccgtgtagtgggtatgtgatgatg |
1047 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||| |
|
|
| T |
38170864 |
gtttatgtgaccttgtagtgggtatgttatgatg |
38170897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 130 - 238
Target Start/End: Complemental strand, 35053988 - 35053880
Alignment:
| Q |
130 |
acccacaagaaataaaatccagaatccaacaacgcacgtccaatttcctccatttgtctcttggacaaaatagcaagagtaccaaatgaaacataaacca |
229 |
Q |
| |
|
||||||||||| ||||||| |||||||||| ||| || ||||||||||| ||||||||| ||||||| | | ||||||||||||||||||||| |
|
|
| T |
35053988 |
acccacaagaatggaaatccacaatccaacaaagcatgtgcaatttcctccctttgtctctcagacaaaacaaagtaactaccaaatgaaacataaacca |
35053889 |
T |
|
| Q |
230 |
cagacgatt |
238 |
Q |
| |
|
|||| |||| |
|
|
| T |
35053888 |
cagaagatt |
35053880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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