View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16138_low_2 (Length: 917)
Name: NF16138_low_2
Description: NF16138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16138_low_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 842; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 842; E-Value: 0
Query Start/End: Original strand, 19 - 908
Target Start/End: Original strand, 38179822 - 38180711
Alignment:
| Q |
19 |
acaacgcacgtccaatttcctccatttgtctcttggacaaaatagcaagagtaccaaatgaaacataaaccacagacgattcatcctttgaatccaacca |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38179822 |
acaacgcacgtccaatttcctccatttgtctattggacaaaatagcaagagtaccaaatgaaacataaaccacagacgattcatcctttgaatccaacca |
38179921 |
T |
|
| Q |
119 |
ttcaaagtaattatcttctgattcaaccccgacaacaccaccaccagacaaagtatcattaggatctttaccgcccaagaaagcatatggaatcaatggt |
218 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
38179922 |
ttcaaagtaattatcttctgattcaacaccgacaacaccaccactagacgaagtatcattaggatctttaccgcccaagaaagtatatggaatcaatggt |
38180021 |
T |
|
| Q |
219 |
ccgattggtatcattttgatcttaccaacatcaacggcttttagtgcctctaattcaaactcttcaacggtgttaacaagtactttagggttggtttctt |
318 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38180022 |
ccgattggtatcattttgatcttaccaacgtcaacggcttttagtgcctctaattcaaactcttcaacggtgttaacaagtactttagggttggtttctt |
38180121 |
T |
|
| Q |
319 |
catctagaacttgaatttgttctttgaaagattgagtagcgatagtgtatatatttgaagataataaaaaagagggaaggtcacgactttcaagagagaa |
418 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
38180122 |
catatagaacttgaatttgttctttgaaagattgagtagcgatagtgtatatatttgaagataataaaaaagagggaaggtcacggctttcaagagagaa |
38180221 |
T |
|
| Q |
419 |
tgacaatcctggtaatgatattgaacatgtttcatcctttgatttgtttgtgatgtagtcaccatgctcatgaaagtaataatagtagatatcaaaaacc |
518 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38180222 |
tgacaatcctggtaatgatattgaacatgtttcatcctttgatttgtttgtgacgtagtcaccatgctcatgaaagtaataatagtagatatcaaaaact |
38180321 |
T |
|
| Q |
519 |
gttgcagcttgaatccataatagcgctgatgggaggtgaagctcacgtgccacctttgcgacccaaggaatgatgataccgtaggctaagcaagtgaatg |
618 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38180322 |
gttgcagcttgaatccataatagcgctgatgggaggtgaagctcacgtgccacctttgcgacccaaggaatgatgataccgtaggctaagcaagtgaatg |
38180421 |
T |
|
| Q |
619 |
gacgaccttcctgtttgccggagagtatgatatttgtgagaaattccgagcagcggcgcttaagctcatactcgtaggtgacaaagtcttcgttgctttc |
718 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38180422 |
gacgaccttcctgtttgccggagagtatgatatttgtgagaaattccgagcagcggcgcttaagctcatactcgtaggtgacaaagtcttcgttgctttc |
38180521 |
T |
|
| Q |
719 |
gaattttgggccatcgtcgtggccgtcagagaaggtggcgaaggaaaggcccgggatggttgatttgttggtaaggcgagtgtgtaagtagatagtggta |
818 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38180522 |
gaattttgggccatcgtcgtggccgtcagagaaggtggcgaaggaaaggcccgagatggttgatttgttggtaaggcgagtgtgtaagtagatagtggta |
38180621 |
T |
|
| Q |
819 |
gcaaaagtgacttgtgcgcccaaagaaatgagacgcttggcgaattggagagcagggtttatgtgaccgtgtagtgggtatgtgatgatg |
908 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38180622 |
gcaaaagtgacttgtgcgcccaaagaaatgagacgtttggcgaattggagagcagggtttatgtgaccgtgtagtgggtatgtgatgatg |
38180711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 754; E-Value: 0
Query Start/End: Original strand, 19 - 908
Target Start/End: Original strand, 38184491 - 38185380
Alignment:
| Q |
19 |
acaacgcacgtccaatttcctccatttgtctcttggacaaaatagcaagagtaccaaatgaaacataaaccacagacgattcatcctttgaatccaacca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38184491 |
acaacgcacgtccaatttcctccatttgtctcttggacaaaatagcaagagtaccaaatgaaacataaaccacagacgattcatcctttgaatccaacca |
38184590 |
T |
|
| Q |
119 |
ttcaaagtaattatcttctgattcaaccccgacaacaccaccaccagacaaagtatcattaggatctttaccgcccaagaaagcatatggaatcaatggt |
218 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38184591 |
ttcaaagtaattatcttctgattcaacatcgacaacaccaccaccagacgaagtatcattaggatctttaccgcccaagaaagcatatggaatcaatggt |
38184690 |
T |
|
| Q |
219 |
ccgattggtatcattttgatcttaccaacatcaacggcttttagtgcctctaattcaaactcttcaacggtgttaacaagtactttagggttggtttctt |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
38184691 |
ccgattggtatcattttgatcttaccaacatcaacggcttttagtgcctctaattcaaactcttcaacggtgttaacaagtactgtagggttggtttctt |
38184790 |
T |
|
| Q |
319 |
catctagaacttgaatttgttctttgaaagattgagtagcgatagtgtatatatttgaagataataaaaaagagggaaggtcacgactttcaagagagaa |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
38184791 |
catctagaacttgaatttgttctttgaaagatcgagtagcgatagtatatatatttgaagataataaaaaagagggaaggtcacggctttcaagagagaa |
38184890 |
T |
|
| Q |
419 |
tgacaatcctggtaatgatattgaacatgtttcatcctttgatttgtttgtgatgtagtcaccatgctcatgaaagtaataatagtagatatcaaaaacc |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
38184891 |
tgacaatcctggtaatgatattgaacatgtttcatcctttgatttgtttgtgatgtagtcaccatgttcatgaaagtaataatagtagatatcaaaaacc |
38184990 |
T |
|
| Q |
519 |
gttgcagcttgaatccataatagcgctgatgggaggtgaagctcacgtgccacctttgcgacccaaggaatgatgataccgtaggctaagcaagtgaatg |
618 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38184991 |
gttgcagcttgaatccataatagcgctgatgggaggtgaagctcacgtgccacctttgcgacccaaggaatgatgataccgtaggctaagcaagtgaatg |
38185090 |
T |
|
| Q |
619 |
gacgaccttcctgtttgccggagagtatgatatttgtgagaaattccgagcagcggcgcttaagctcatactcgtaggtgacaaagtcttcgttgctttc |
718 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||| ||||||||| || ||||| || ||||||||||||||||| |
|
|
| T |
38185091 |
gacgaccttcctgtttgccggagagtatgatatttgttagaaattctgagcagtggcacttaagctcggacctgtaggcgatgaagtcttcgttgctttc |
38185190 |
T |
|
| Q |
719 |
gaattttgggccatcgtcgtggccgtcagagaaggtggcgaaggaaaggcccgggatggttgatttgttggtaaggcgagtgtgtaagtagatagtggta |
818 |
Q |
| |
|
||| ||| || ||||||| ||| |||||||||||||||||||| ||||| |||||||||| ||||||| |||||| |||||||||||||||||| ||| |
|
|
| T |
38185191 |
gaaatttttaccgtcgtcgtagccatcagagaaggtggcgaaggagaggcctgggatggttggtttgttgataaggccagtgtgtaagtagatagttgta |
38185290 |
T |
|
| Q |
819 |
gcaaaagtgacttgtgcgcccaaagaaatgagacgcttggcgaattggagagcagggtttatgtgaccgtgtagtgggtatgtgatgatg |
908 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38185291 |
gcaaaagtgacttgtgcgccgaaagaaatgagacgcttggcgaattggagtgcagggtttatgtgaccgtgtagtgggtatgtgatgatg |
38185380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 19 - 908
Target Start/End: Original strand, 38170008 - 38170897
Alignment:
| Q |
19 |
acaacgcacgtccaatttcctccatttgtctcttggacaaaatagcaagagtaccaaatgaaacataaaccacagacgattcatcctttgaatccaacca |
118 |
Q |
| |
|
|||| |||||| ||||||||||||||||||| || ||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
38170008 |
acaaggcacgtgcaatttcctccatttgtcttttagacaaaacagcaagagtaccaaatgaaacataaacaacagacttttcatcctttgaatccaacca |
38170107 |
T |
|
| Q |
119 |
ttcaaagtaattatcttctgattcaaccccgacaacaccaccaccagacaaagtatcattaggatctttaccgcccaagaaagcatatggaatcaatggt |
218 |
Q |
| |
|
|| || ||||| ||| | ||| ||||| | |||||| |||||||| || || |||| ||||||| || || ||||||||||| |||||||||| ||| |
|
|
| T |
38170108 |
ttgaatgtaatcatcctttgagtcaacacggacaacgtcaccaccaaacgaattatccgtaggatccttgccatccaagaaagcagatggaatcaacggt |
38170207 |
T |
|
| Q |
219 |
ccgattggtatcattttgatcttaccaacatcaacggcttttagtgcctctaattcaaactcttcaacggtgttaacaagtactttagggttggtttctt |
318 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| || ||||| || | ||||||||| ||||||||||| ||||||||| | |||||| |||||| |
|
|
| T |
38170208 |
ccgatgggtatcattttgatcttaccaacatcaactttattcagtgcatccagttcaaactcctcaacggtgttcacaagtactcttgggttgatttctt |
38170307 |
T |
|
| Q |
319 |
cat-ctagaacttgaatttgttctttgaaagattgagtagcgatagtgtatatatttgaagataataaaaaagagggaaggtcacgactttcaagagaga |
417 |
Q |
| |
|
||| | | |||| ||||||| ||||||| |||| || ||| | ||||||| ||||||||| |||||||||||||||||||| || |||| |||||||| |
|
|
| T |
38170308 |
cattcaacaact-gaatttgctctttgagagatggaagagcaaaagtgtatgtatttgaagccaataaaaaagagggaaggtcgcggcttttaagagaga |
38170406 |
T |
|
| Q |
418 |
atgacaatcctggtaatgatattgaacatgtttcatcctttgatttgtttgtgatgtagtcaccatgctcatgaaagtaataatagtagatatcaaaaac |
517 |
Q |
| |
|
|||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||| | |||||||| || |
|
|
| T |
38170407 |
atgacaatcccggtaatgatattaaacacgtttcatcctttgatttgtttgtgatgtagtcaccgtgttcatgaaagtaataatagaatatatcaaacac |
38170506 |
T |
|
| Q |
518 |
cgttgcagcttgaatccataatagcgctgatgggaggtgaagctcacgtgccacctttgcgacccaaggaatgatgataccgtaggctaagcaagtgaat |
617 |
Q |
| |
|
|||||| ||||||||||| || || | ||||||||||||||||||| |||||||||| | |||| | || |||| | |||| ||||||||||||| |
|
|
| T |
38170507 |
cgttgctgcttgaatccacaacagtgttgatgggaggtgaagctcatgtgccaccttgggagcccatgaaagtatgagagtgtagattaagcaagtgaat |
38170606 |
T |
|
| Q |
618 |
ggacgaccttcctgtttgccggagagtatgatatttgtgagaaattccgagcagcggcgcttaagctcatactcgtaggtgacaaagtcttcgttgcttt |
717 |
Q |
| |
|
||| || ||| |||||| |||||| |||||||||||||||||||| |||| ||| ||| ||| |||| || ||||| ||| | |||||||| || |
|
|
| T |
38170607 |
ggatgattttcttgtttggaggagagaatgatatttgtgagaaattctgagccgcgacgcgtaaactcagacatgtaggagacgatgtcttcgtcgccaa |
38170706 |
T |
|
| Q |
718 |
cgaattttgggccatcgtcgtggccgtcagagaaggtggcgaaggaaaggcccgggatggttgatttgttggtaaggcgagtgtgtaagtagatagtggt |
817 |
Q |
| |
|
| ||||| | || ||||| | |||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||| ||| ||||| ||||||||| |
|
|
| T |
38170707 |
aggatttttgaccgtcgtcatagccgtcagagaaggtggcgaaggagaggcccgggatggttggtttgttgataaggcgactgtataagtggatagtggt |
38170806 |
T |
|
| Q |
818 |
agcaaaagtgacttgtgcgcccaaagaaatgagacgcttggcgaattggagagcagggtttatgtgaccgtgtagtgggtatgtgatgatg |
908 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
38170807 |
agcaaaagtgacttttgcgcccaaagaaatgagacgcttggtgaattggagggcagggtttatgtgaccttgtagtgggtatgttatgatg |
38170897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University