View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16138_low_5 (Length: 272)
Name: NF16138_low_5
Description: NF16138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16138_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 145; Significance: 2e-76; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 42 - 194
Target Start/End: Complemental strand, 11444071 - 11443919
Alignment:
| Q |
42 |
ctctaaaacaaataaaacactaagttgagcttgaaaatctaaaccaaggattaatgagtaccggagatccatcagatggcttcaagctttgttgattttg |
141 |
Q |
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| T |
11444071 |
ctctaaaacaaataaaacactaagttgagcttgaaaatctaaaccaaggattaatgagtaccggagatccatcagatggcttcaagcttcgttgattttg |
11443972 |
T |
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| Q |
142 |
atcaccaacccaaacatcgctctgcttgggctttagtattgttgtgatcatcg |
194 |
Q |
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| T |
11443971 |
atcaccaacccaaacatcgctctgcttcggctttagtattgttgtgatcatcg |
11443919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 42 - 194
Target Start/End: Original strand, 11549069 - 11549221
Alignment:
| Q |
42 |
ctctaaaacaaataaaacactaagttgagcttgaaaatctaaaccaaggattaatgagtaccggagatccatcagatggcttcaagctttgttgattttg |
141 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
11549069 |
ctctaaaacaaataaaacactaagttgagcttgaaaatctaaaccaaggattaatgagtaccggagatccatcagatggcttcaagcttcgttgattttg |
11549168 |
T |
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| Q |
142 |
atcaccaacccaaacatcgctctgcttgggctttagtattgttgtgatcatcg |
194 |
Q |
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| T |
11549169 |
atcaccaacccaaacatcgctctgcttcggctttagtattgttgtgatcatcg |
11549221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 200 - 255
Target Start/End: Complemental strand, 11443860 - 11443805
Alignment:
| Q |
200 |
ttatgatgtaaaaacaacatatatgcagtaatagaaagcaaatccatataatatgt |
255 |
Q |
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| T |
11443860 |
ttatgatgtaaaaacaacatatatgcagtaatagaaagcaaacccatataatatgt |
11443805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 200 - 255
Target Start/End: Original strand, 11549280 - 11549335
Alignment:
| Q |
200 |
ttatgatgtaaaaacaacatatatgcagtaatagaaagcaaatccatataatatgt |
255 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
11549280 |
ttatgatgtaaaaacaacatatatgcagaaatagaaagcaaatccatataatatgt |
11549335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 96 - 195
Target Start/End: Complemental strand, 11441134 - 11441034
Alignment:
| Q |
96 |
tgagtaccggagatccatcagatggcttcaagctttgttgattttgatcaccaac-ccaaacatcgctctgcttgggctttagtattgttgtgatcatcg |
194 |
Q |
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||||||| ||| ||||||| ||||||||||||| | |||||||||||||||||| | |||||||||||||||| ||||| || ||||| |||||||||| |
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| T |
11441134 |
tgagtactggatatccatccgatggcttcaagcctcattgattttgatcaccaactcgaaacatcgctctgcttcggcttcagcattgtcgtgatcatcg |
11441035 |
T |
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| Q |
195 |
c |
195 |
Q |
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| |
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| T |
11441034 |
c |
11441034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 202 - 255
Target Start/End: Complemental strand, 11440974 - 11440921
Alignment:
| Q |
202 |
atgatgtaaaaacaacatatatgcagtaatagaaagcaaatccatataatatgt |
255 |
Q |
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||||||||||||||| |||||||| | |||| ||||||||||||||||| |||| |
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| T |
11440974 |
atgatgtaaaaacaatatatatgccgaaatacaaagcaaatccatataacatgt |
11440921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 70
Target Start/End: Complemental strand, 11441159 - 11441131
Alignment:
| Q |
42 |
ctctaaaacaaataaaacactaagttgag |
70 |
Q |
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| T |
11441159 |
ctctaaaacaaataaaacactaagttgag |
11441131 |
T |
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