View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16139_high_3 (Length: 302)
Name: NF16139_high_3
Description: NF16139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16139_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 19 - 293
Target Start/End: Original strand, 47171648 - 47171920
Alignment:
| Q |
19 |
atttagtcctttgaattttagttgcaagggttattttgttttctaccctagaattgggtacttatgttttcgtttcttccagggatgtaaatcattatca |
118 |
Q |
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| T |
47171648 |
atttagtcctttgaattttagttgcaagggttattttgttttctaccctagaattgggtacttatgttttcgtttcttccagggatgtaaatcattatca |
47171747 |
T |
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| Q |
119 |
tataagtaatacaagatgatgatgattttaatatttttgatctcgtacttctgatttttattcacaatgcatttgatctatcttctc--tgttttttcag |
216 |
Q |
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| T |
47171748 |
tataagtaatacaa---gatgatgattttaatatttttgatctcatacttctga-ttttattcataatgcatttgatctatcttctctttgttttttcag |
47171843 |
T |
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| Q |
217 |
aataagaagtttggaaccgatagttaattacttgattaaacatctatgtttcttattttcaattctaccattcatct |
293 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47171844 |
aataggaagtttggaaccgatagttaattacttgattaaacatctatgtttcttattttcaattctaccattcatct |
47171920 |
T |
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