View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16139_low_10 (Length: 238)

Name: NF16139_low_10
Description: NF16139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16139_low_10
NF16139_low_10
[»] chr3 (12 HSPs)
chr3 (1-217)||(2856031-2856247)
chr3 (1-217)||(2768770-2768986)
chr3 (3-217)||(2758917-2759131)
chr3 (1-217)||(2748699-2748915)
chr3 (1-217)||(2818258-2818474)
chr3 (1-206)||(5412608-5412813)
chr3 (1-217)||(2838824-2839037)
chr3 (1-208)||(2797062-2797269)
chr3 (100-217)||(2807070-2807187)
chr3 (91-208)||(2790158-2790275)
chr3 (1-42)||(2755745-2755786)
chr3 (124-182)||(22648771-22648829)
[»] scaffold0691 (1 HSPs)
scaffold0691 (1-213)||(6377-6589)


Alignment Details
Target: chr3 (Bit Score: 173; Significance: 4e-93; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 2856247 - 2856031
Alignment:
Q  1 catttcgcactgaagatgtcattgatgaatatcttcggttgatccatagggccaatcctcatggacgtggatctttagtcaacaatgttacaagccgaat 100  Q
    ||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  2856247 catttcgcattgaagatgtcattgatgaataccttcggttgatacatagggccaatcctcatggacgtggatctttagtcaacaaggttacaagccgaat 2856148  T
Q  101 caaaactttgattccccgtcataaaattgcatcagagattcaggacattaagttgtcaattcgcggaatcaaggaaagaagcgagaggtataacttccaa 200  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||||||||| |||    
T  2856147 caaaactttgattccccatcataaaattgcatcagagattcaggacatcaagttgtcaattcgtggaatcaaggaaagaagccagaggtataactttcaa 2856048  T
Q  201 atttcacatgaacaagg 217  Q
    |||||||| || |||||    
T  2856047 atttcacacgagcaagg 2856031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 2768770 - 2768986
Alignment:
Q  1 catttcgcactgaagatgtcattgatgaatatcttcggttgatccatagggccaatcctcatggacgtggatctttagtcaacaatgttacaagccgaat 100  Q
    ||||||||| ||||||||||||||||||||| |||||||||| |||||||||||||| ||   |||| ||||||||| ||  |||  || |||||| |||    
T  2768770 catttcgcattgaagatgtcattgatgaataccttcggttgacccatagggccaatcgtcccagacgcggatctttaatcttcaagattgcaagcctaat 2768869  T
Q  101 caaaactttgattccccgtcataaaattgcatcagagattcaggacattaagttgtcaattcgcggaatcaaggaaagaagcgagaggtataacttccaa 200  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||    
T  2768870 caaaactttgactccccgtcataaaattgcattagagattcaggacattaagttgtcaattcgtggaatcaaggaaagaagcgagaggtatagctttcaa 2768969  T
Q  201 atttcacatgaacaagg 217  Q
    | |||||||||||||||    
T  2768970 acttcacatgaacaagg 2768986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 3 - 217
Target Start/End: Original strand, 2758917 - 2759131
Alignment:
Q  3 tttcgcactgaagatgtcattgatgaatatcttcggttgatccatagggccaatcctcatggacgtggatctttagtcaacaatgttacaagccgaatca 102  Q
    ||||||| ||||||| | ||||| ||||| |||||| ||||||||| ||||||||||| |||  | |||||| || |||||||  ||||||||| |||||    
T  2758917 tttcgcattgaagatataattgacgaataccttcggctgatccatacggccaatcctcctggtagcggatctgtattcaacaagattacaagcccaatca 2759016  T
Q  103 aaactttgattccccgtcataaaattgcatcagagattcaggacattaagttgtcaattcgcggaatcaaggaaagaagcgagaggtataacttccaaat 202  Q
    ||||||||||||||||||| |||||||||||||||||||| ||||| ||| || |||||| |||||||||||||||||||| |||||||||||| |||||    
T  2759017 aaactttgattccccgtcacaaaattgcatcagagattcaagacatcaagctgacaattcacggaatcaaggaaagaagcgtgaggtataactttcaaat 2759116  T
Q  203 ttcacatgaacaagg 217  Q
    |||| ||||||||||    
T  2759117 ttcaaatgaacaagg 2759131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 2748699 - 2748915
Alignment:
Q  1 catttcgcactgaagatgtcattgatgaatatcttcggttgatccatagggccaatcctcatggacgtggatctttagtcaacaatgttacaagccgaat 100  Q
    ||||||||| ||||||||||||||||||||| |||||| | || |||||||||||||||| | || | ||||||||||||  |||  || |||| | |||    
T  2748699 catttcgcattgaagatgtcattgatgaataccttcggctaatgcatagggccaatcctcctagatgcggatctttagtcggcaagattgcaaggcaaat 2748798  T
Q  101 caaaactttgattccccgtcataaaattgcatcagagattcaggacattaagttgtcaattcgcggaatcaaggaaagaagcgagaggtataacttccaa 200  Q
    |||||||||||||||||||||| | || ||||| || |||||||||||||| || |||||||| ||||||||||||||||| |||||||||||||| |||    
T  2748799 caaaactttgattccccgtcatcatatagcatctgaaattcaggacattaaattatcaattcgtggaatcaaggaaagaagtgagaggtataactttcaa 2748898  T
Q  201 atttcacatgaacaagg 217  Q
    |||||||| ||||||||    
T  2748899 atttcacacgaacaagg 2748915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 2818258 - 2818474
Alignment:
Q  1 catttcgcactgaagatgtcattgatgaatatcttcggttgatccatagggccaatcctcatggacgtggatctttagtcaacaatgttacaagccgaat 100  Q
    ||||||||| ||||||||||||||||||||| ||||  |||||||||||| ||||| |||  ||| |  ||||||| ||   |||  || ||||   |||    
T  2818258 catttcgcattgaagatgtcattgatgaataccttcttttgatccataggaccaattctccaggatgcagatctttggtatgcaagattccaagattaat 2818357  T
Q  101 caaaactttgattccccgtcataaaattgcatcagagattcaggacattaagttgtcaattcgcggaatcaaggaaagaagcgagaggtataacttccaa 200  Q
     || ||||||| ||||||| || ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  2818358 gaagactttgactccccgttatgaaattgcatcagagattcaggacatcaagttgtcaattcgtggaatcaaggaaagaagcgagaggtataacttccaa 2818457  T
Q  201 atttcacatgaacaagg 217  Q
    ||||| |||||||||||    
T  2818458 atttcgcatgaacaagg 2818474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 5412608 - 5412813
Alignment:
Q  1 catttcgcactgaagatgtcattgatgaatatcttcggttgatccatagggccaatcctcatggacgtggatctttagtcaacaatgttacaagccgaat 100  Q
    ||||||||| ||||||||||||||| ||||| | |||| | || ||||||| |||||||| |||| |  |||||||||||  |||  || |||||   ||    
T  5412608 catttcgcattgaagatgtcattgacgaataccatcggctaatgcatagggtcaatcctcttggatgcagatctttagtctgcaagattgcaagcttgat 5412707  T
Q  101 caaaactttgattccccgtcataaaattgcatcagagattcaggacattaagttgtcaattcgcggaatcaaggaaagaagcgagaggtataacttccaa 200  Q
    ||||||||||||||||| |||| | || ||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||    
T  5412708 caaaactttgattccccatcatcagatagcatctgagattcaggacattaagttgtcaattcgtggaatcaaggaaagaagtgagaggtataactttcaa 5412807  T
Q  201 atttca 206  Q
    ||||||    
T  5412808 atttca 5412813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 2839037 - 2838824
Alignment:
Q  1 catttcgcactgaagatgtcattgatgaatatcttcggttgatccatagggccaatcctcatggacgtggatctttagtcaacaatgttacaagccgaat 100  Q
    ||||||||| ||||||||||||||||||||| |||||  | || |||||||||||||||| |||| |  ||||||||  ||  | |    ||||   |||    
T  2839037 catttcgcattgaagatgtcattgatgaataccttcgactaatgcatagggccaatcctcctggatgcagatctttatgcatgactc---caaggttaat 2838941  T
Q  101 caaaactttgattccccgtcataaaattgcatcagagattcaggacattaagttgtcaattcgcggaatcaaggaaagaagcgagaggtataacttccaa 200  Q
    ||||||||||||||||||||| |||||||||||||||||||| ||||| ||| || ||| || |||||||||| |||||||||||||||||||||| |||    
T  2838940 caaaactttgattccccgtcacaaaattgcatcagagattcaagacatcaagctgacaactcacggaatcaagaaaagaagcgagaggtataactttcaa 2838841  T
Q  201 atttcacatgaacaagg 217  Q
    |||||| ||||||||||    
T  2838840 atttcaaatgaacaagg 2838824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 2797062 - 2797269
Alignment:
Q  1 catttcgcactgaagatgtcattgatgaatatcttcggttgatccatagggccaatcctcatggacgtggatctttagtcaacaatgttacaagccgaat 100  Q
    ||||||||| ||||||||||||||||||||| |||| | |||| ||||||||| ||||||  ||| | ||||||||||||  |||  || |||| | |||    
T  2797062 catttcgcattgaagatgtcattgatgaataccttcagctgatgcatagggcctatcctccgggatgcggatctttagtctgcaagattgcaagtctaat 2797161  T
Q  101 caaaactttgattccccgtcataaaattgcatcagagattcaggacattaagttgtcaattcgcggaatcaaggaaagaagcgagaggtataacttccaa 200  Q
    |||||| |||||| ||| |||  | || ||||| |||||| || |||||||| | |||||||| ||||||||||||||||| |||||||||||||| |||    
T  2797162 caaaacattgatttcccttcaccagatagcatctgagattaagaacattaagatatcaattcgtggaatcaaggaaagaagtgagaggtataactttcaa 2797261  T
Q  201 atttcaca 208  Q
    ||||||||    
T  2797262 atttcaca 2797269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 100 - 217
Target Start/End: Original strand, 2807070 - 2807187
Alignment:
Q  100 tcaaaactttgattccccgtcataaaattgcatcagagattcaggacattaagttgtcaattcgcggaatcaaggaaagaagcgagaggtataacttcca 199  Q
    ||||||||||||||||||||||| | || |||||  |||| |  ||||||||| ||||  |||||||||||||||||||||| |||||||||||||| ||    
T  2807070 tcaaaactttgattccccgtcatcatatagcatctaagatccgagacattaaggtgtcggttcgcggaatcaaggaaagaagtgagaggtataacttaca 2807169  T
Q  200 aatttcacatgaacaagg 217  Q
    ||||||||||||||||||    
T  2807170 aatttcacatgaacaagg 2807187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 91 - 208
Target Start/End: Original strand, 2790158 - 2790275
Alignment:
Q  91 caagccgaatcaaaactttgattccccgtcataaaattgcatcagagattcaggacattaagttgtcaattcgcggaatcaaggaaagaagcgagaggta 190  Q
    |||||| |||||||||||||||||||| |||| | || ||||| |||||| |  |||||||| | |||||||| ||||||||||||||||| ||||||||    
T  2790158 caagcctaatcaaaactttgattccccatcatcagatagcatctgagattaaaaacattaagatatcaattcgtggaatcaaggaaagaagtgagaggta 2790257  T
Q  191 taacttccaaatttcaca 208  Q
    |||||| |||||||||||    
T  2790258 taactttcaaatttcaca 2790275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 2755745 - 2755786
Alignment:
Q  1 catttcgcactgaagatgtcattgatgaatatcttcggttga 42  Q
    ||||||||| ||||||||||||||||||||| ||||||||||    
T  2755745 catttcgcattgaagatgtcattgatgaataccttcggttga 2755786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 182
Target Start/End: Complemental strand, 22648829 - 22648771
Alignment:
Q  124 aaattgcatcagagattcaggacattaagttgtcaattcgcggaatcaaggaaagaagc 182  Q
    |||||||||| |||||||| ||||||||||| |  ||||| ||||||||||||| ||||    
T  22648829 aaattgcatccgagattcaagacattaagttatttattcgtggaatcaaggaaaaaagc 22648771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0691 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 6589 - 6377
Alignment:
Q  1 catttcgcactgaagatgtcattgatgaatatcttcggttgatccatagggccaatcctcatggacgtggatctttagtcaacaatgttacaagccgaat 100  Q
    ||||||||| ||||||||| ||||||||||| |||||| |||||||||||||||| |||| |||| | ||||| ||||||  |||  ||  ||||| |||    
T  6589 catttcgcattgaagatgttattgatgaataccttcggctgatccatagggccaaccctcctggatgcggatcattagtctgcaagattgtaagcctaat 6490  T
Q  101 caaaactttgattccccgtcataaaattgcatcagagattcaggacattaagttgtcaattcgcggaatcaaggaaagaagcgagaggtataacttccaa 200  Q
    ||||||||||||| | |  ||| | || ||||| |||||||||||||| ||| |||||||||| ||||||||||| ||||| || ||||||||||| |||    
T  6489 caaaactttgatttctcagcatcagatagcatctgagattcaggacataaagctgtcaattcgtggaatcaaggacagaagtgaaaggtataactttcaa 6390  T
Q  201 atttcacatgaac 213  Q
    |||| ||||||||    
T  6389 attttacatgaac 6377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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