View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16139_low_11 (Length: 210)
Name: NF16139_low_11
Description: NF16139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16139_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 143; Significance: 3e-75; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 16 - 191
Target Start/End: Complemental strand, 5111985 - 5111814
Alignment:
| Q |
16 |
ttgttgaacattaatatgttgcctgtgagcaaattatctttaaggttgaccttgttcagttgtgtatgatcaccaattccttttggaatttctcctttag |
115 |
Q |
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| T |
5111985 |
ttgttgaacattaatatgttgcctgtgagcaaattatcttcaaggttgaccgtgttcagttctgtaagatcaccaattccttttggaatttctcctttag |
5111886 |
T |
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| Q |
116 |
ttcaacacatatagatagatagatagaggaaatacattcattaattagaattacttagaatgattcatatattata |
191 |
Q |
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| T |
5111885 |
ttcaacacatatagataga----tagaggaaatacattcattaattagaattacttagaatgattcatatattata |
5111814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 16 - 125
Target Start/End: Complemental strand, 5095227 - 5095118
Alignment:
| Q |
16 |
ttgttgaacattaatatgttgcctgtgagcaaattatctttaaggttgaccttgttcagttgtgtatgatcaccaattccttttggaatttctcctttag |
115 |
Q |
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|||||||||||||||||||||||| ||| |||||||||| |||||||||| | |||| ||||| | ||||||||||| |||| |||||||||||||||| |
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| T |
5095227 |
ttgttgaacattaatatgttgcctacgaggaaattatcttgaaggttgaccattttcaattgtgaaagatcaccaatttctttgggaatttctcctttag |
5095128 |
T |
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| Q |
116 |
ttcaacacat |
125 |
Q |
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||||| |||| |
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| T |
5095127 |
ttcaatacat |
5095118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 27 - 122
Target Start/End: Original strand, 5083134 - 5083229
Alignment:
| Q |
27 |
taatatgttgcctgtgagcaaattatctttaaggttgaccttgttcagttgtgtatgatcaccaattccttttggaatttctcctttagttcaaca |
122 |
Q |
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| T |
5083134 |
taatatgttgcctgagagaaaattgcgttgaaggtttaccgttctcagttgtgtaagatcaccaattcctttaggaatttcacctttagttcaaca |
5083229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 110
Target Start/End: Original strand, 14427505 - 14427599
Alignment:
| Q |
16 |
ttgttgaacattaatatgttgcctgtgagcaaattatctttaaggttgaccttgttcagttgtgtatgatcaccaattccttttggaatttctcc |
110 |
Q |
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||||||||||| |||||||| |||||||||| ||||| || ||||| || ||||||||||| |||||||||||||||| ||||||||||| |
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| T |
14427505 |
ttgttgaacatcaatatgttacctgtgagcatattatattgcaggttcacaaatctcagttgtgtaagatcaccaattcctttcggaatttctcc |
14427599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 76 - 122
Target Start/End: Complemental strand, 16874600 - 16874554
Alignment:
| Q |
76 |
tgtgtatgatcaccaattccttttggaatttctcctttagttcaaca |
122 |
Q |
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| T |
16874600 |
tgtgtaagatcaccaattccttttggaatttcaccttttgttcaaca |
16874554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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