View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16139_low_2 (Length: 469)
Name: NF16139_low_2
Description: NF16139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16139_low_2 |
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| [»] scaffold0643 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 168; Significance: 7e-90; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 102 - 297
Target Start/End: Original strand, 30013670 - 30013865
Alignment:
| Q |
102 |
ctaacacatgtcggtcaccgggcatgccttcaattcaaaggcaacaatatcattgtaaaattggaatttaaattagctttgtaagaagtagaaacaaaag |
201 |
Q |
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| T |
30013670 |
ctaacacatgtcggtcaccgggcatgccttcaattcaaaggcaacaataacattgtaaaattgggatttcaattagctttgtaagaagtagaaataaaag |
30013769 |
T |
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| Q |
202 |
ttatctgtgaaaaatattgttgtgttctcaaaaatcagaacattgaaacctgcaatgaaatagtacttatgaaatacagaaagtttgcttctagtt |
297 |
Q |
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| T |
30013770 |
ttatttgtgaaaaatattgttgtgttctcaaaaatcagaacattgaaacctgcaatgaaacagtacttatgaaatacggaaagtttgcttctagtt |
30013865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 293 - 444
Target Start/End: Original strand, 30013914 - 30014065
Alignment:
| Q |
293 |
tagttactgatgagaatcttaagcaacaaattatgttctcactagatgaaagtatctattagaataaacaaaagaactagttacaaaaagaacaaatcag |
392 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
30013914 |
tagttactgatgagaatcttaagcaacaaattatgtcctcactagatgcagctatctatcagaataaacaaaagaactagttacaaaaagaacaaatcag |
30014013 |
T |
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| Q |
393 |
cacgccgtaacagcaaaaacaccacaaacagcagctataggagataagctag |
444 |
Q |
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| T |
30014014 |
cacgctgtaacagcaaaaataccacaaacagcagctataggagataagctag |
30014065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 194 - 297
Target Start/End: Original strand, 30073347 - 30073450
Alignment:
| Q |
194 |
aacaaaagttatctgtgaaaaatattgttgtgttctcaaaaatcagaacattgaaacctgcaatgaaatagtacttatgaaatacagaaagtttgcttct |
293 |
Q |
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||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30073347 |
aacaaaatttatttgtgaaaaatattgatgtgttctcaaaaatcagaacattgaaacctgcaatgaaatagtacttatgaaatacagaaagtttgcttct |
30073446 |
T |
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| Q |
294 |
agtt |
297 |
Q |
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|||| |
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| T |
30073447 |
agtt |
30073450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 293 - 394
Target Start/End: Original strand, 30073498 - 30073599
Alignment:
| Q |
293 |
tagttactgatgagaatcttaagcaacaaattatgttctcactagatgaaagtatctattagaataaacaaaagaactagttacaaaaagaacaaatcag |
392 |
Q |
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|||||||||||||||||||||||||||||||||| | ||||||||||| | ||| ||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
30073498 |
tagttactgatgagaatcttaagcaacaaattatatcctcactagatgcagctatatatcagaataaacaaaagaactagttacaaaaagaacaaatcag |
30073597 |
T |
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| Q |
393 |
ca |
394 |
Q |
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|| |
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| T |
30073598 |
ca |
30073599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 102 - 167
Target Start/End: Original strand, 30073283 - 30073348
Alignment:
| Q |
102 |
ctaacacatgtcggtcaccgggcatgccttcaattcaaaggcaacaatatcattgtaaaattggaa |
167 |
Q |
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| T |
30073283 |
ctaaaacatgacggtcaccgcgaatgccttcaattcaaaggcaacaataacattgtaaaattggaa |
30073348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0643 (Bit Score: 84; Significance: 1e-39; HSPs: 2)
Name: scaffold0643
Description:
Target: scaffold0643; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 303 - 406
Target Start/End: Complemental strand, 8348 - 8245
Alignment:
| Q |
303 |
tgagaatcttaagcaacaaattatgttctcactagatgaaagtatctattagaataaacaaaagaactagttacaaaaagaacaaatcagcacgccgtaa |
402 |
Q |
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|||||||||||||||||||||||||| ||||||||| | || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8348 |
tgagaatcttaagcaacaaattatgtcctcactagaagcaactatctatcagaataaacaaaagaactagttacaaaaagaacaaatcagcacgccgtaa |
8249 |
T |
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| Q |
403 |
cagc |
406 |
Q |
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|||| |
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| T |
8248 |
cagc |
8245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0643; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 421 - 453
Target Start/End: Complemental strand, 8232 - 8200
Alignment:
| Q |
421 |
cagcagctataggagataagctagtgagcaaac |
453 |
Q |
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| T |
8232 |
cagcagctataggagataagctagcgagcaaac |
8200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 40 - 101
Target Start/End: Complemental strand, 30778359 - 30778298
Alignment:
| Q |
40 |
tctacaaattactcagcaaccaaacaacaagaaaagggcataaaacacacaaatcatcatga |
101 |
Q |
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| T |
30778359 |
tctacaaatttctcaacatccaaacaacgagaaaagggcataaaacacacaaatcagcatga |
30778298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 40 - 101
Target Start/End: Complemental strand, 3069414 - 3069354
Alignment:
| Q |
40 |
tctacaaattactcagcaaccaaacaacaagaaaagggcataaaacacacaaatcatcatga |
101 |
Q |
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|||||||||| |||| |||||||| ||||||||||| | || |||||||||||||||||||| |
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| T |
3069414 |
tctacaaatttctcaacaaccaaataacaagaaaagagaat-aaacacacaaatcatcatga |
3069354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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